Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme216288g00001 ATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATCTCCTTACCTTCTCTTCATCCTATGAGTCTCTGAGTCTGGATCAAGTCACGAAATTTTTTGACCTCTCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGACTGCAAGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTGCCTCCAAGACGAAGGGATGGACA 344 0.4506 MLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPPRRRDG 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme216288g00001 114 Gene3D - 6 77 IPR036388 -
Trme216288g00001 114 ProSiteProfiles PCI domain profile. 1 72 IPR000717 -
Trme216288g00001 114 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 112 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Trme216288g00001 114 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1 89 IPR000717 -
Trme216288g00001 114 Pfam PCI domain 1 68 IPR000717 -
Trme216288g00001 114 SUPERFAMILY "Winged helix" DNA-binding domain 4 71 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme216288g00001 Trme-Chr216288 1 344 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme216288g00001 1 114 Eukaryotic Initiation Factors Gene Family AT3G56150 79.130 6.45e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme216288g00001 K03252 - gmx:100781967 205.297