Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme216265g00001 GGTGCTATTAAAGCGTTAGTGGAACTTCTAGCTTCTGGAACTCTTAGAGGGAAGAAAGATGCTGCAACCGCTTTATTTAACCTATCAATATTTCACGACAATAAAGCTCGTATGGTTCAAGCTGGAGCAGTGAAGTTTCTGGCTATGCTATTGGATCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTATCAACGATCCCAGAGGGTCGAGTAGAAATTGTTAGGGAAAGCGGAATACCCTTACTGGTTGAACTCGTGGAGTCGGGTTCTCATAGGGGAAAGGAAAATGCTGCATCCATTCTCTTGCAACTAAGCCTCCATAGCCGTAAATTTTGTACCCTGGTTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTATCCCAGTTTGGTACGCCAAGA 417 0.4484 GAIKALVELLASGTLRGKKDAATALFNLSIFHDNKARMVQAGAVKFLAMLLDPADGMVDKAVALLANLSTIPEGRVEIVRESGIPLLVELVESGSHRGKENAASILLQLSLHSRKFCTLVLQEGAVPPIVALSQFGTPR 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme216265g00001 139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 42 83 IPR000225 GO:0005515
Trme216265g00001 139 SMART arm_5 31 70 IPR000225 GO:0005515
Trme216265g00001 139 SMART arm_5 1 30 IPR000225 GO:0005515
Trme216265g00001 139 SMART arm_5 72 111 IPR000225 GO:0005515
Trme216265g00001 139 SUPERFAMILY ARM repeat 1 135 IPR016024 -
Trme216265g00001 139 Pfam Armadillo/beta-catenin-like repeat 1 29 IPR000225 GO:0005515
Trme216265g00001 139 Gene3D - 1 139 IPR011989 -
Trme216265g00001 139 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1 43 IPR000225 GO:0005515
Trme216265g00001 139 PANTHER U BOX DOMAIN-CONTAINING 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme216265g00001 Trme-Chr216265 2 418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme216265g00001 1 139 U-box Gene Family AT3G54790 75.540 2.83e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme216265g00001 - - psat:127126040 247.284