Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2160g00001 ATGTTAGACTTGAAATTGGAGGAAGAAAGCGAAGAAGGAAGAGCACAACGTTTATGGCTGCGTTTAAAAGACAAGAAGCGAATTCTTATAATAGTTGATGATCTATGGAGTGAGATCCATTTGATGGATATAGGAATTCGCTTAGACAATGTTAATAGACGCAGATGGAAAATTCTTGTAGCCACTCGTAATGAACATGTTTGTAATTTAATGGATTGTCAAAAGAAAATTCATCTGGGGCTCTTGTCCGAAGATGAATCTTGGACTTTATTCCAAAAACTTGCAAGAATTGATGATGAATTCTGTGAGTTATTAGATGGTGTGCCACAGAAAGTATGCCATGAATGTAAGGGGCTTCCCATAGCAATCAAAACGATGGCATCTTCCTTAAAAGGAAAGCATAATATTGAGTGGCAGTCAACATTAGCCAAGTTGATGGATTCAAAGGTATTTCATGATCATGAAGGAAGAGTGATGGATGATTTAAAGTGTCTTAAATCAAGTTTTGATTGTTTACAAAATAGAGAAACAGAGTTGATCTTTCTGATGTGTTGTATGTTTCCAGAAGATTATCATATCCCAATAGAAGATTTAATGAGGTATGCAATTGGACTACGTCTAGGAAGAACATACTCGTTACAATCAACAAGGAACTTGGTCCAAGCACACATAAACAAACTTTTGGATTCTTGTTTGCTGATGCATGGTTGCGTGAAGATGCATGACATGGTTCGTGACATAGCCTTATGGATATCACGAAGATCAGATAATCACAAAATTTTGGTAAGCATTGACAAACTAGAGGATGCTAGTTTAAGAGATTGTTTTGCAGTATCCTCATGGTGGTATAACAAAAATCCAATTTTTCGTCAATGGCATTCCCCAAACCTTAAAATTCTATTGCTAAATATAAATGAGAGTAGATCATGGAATTCCCTGGATATATCTCATTTAACATTTGAAGGAATAGAAGAGCTCAAGGTTTTTTCAGTGACCATTGATTACTATACTTCCCAAATAATACCATTATTATTGCCACCATCAACCCAATTGTTAACAAATGTTCGAACTCTGCGCTTGAATGGATTCAAGTTTGGTGACATTTCTTTCATAACAAGCTTAACAAGACTTGAGGTTCTTGACTTGCGACGTTCTCACTTCAATGAATTTCCTAACAAAATAGGAGAACTCAAAAGGCTGAAGCTAATAGATTTATCACTCTGTCATATTTTCCAAAAAACCTATAATGGAGCAATTGGAAAATGTTTACAACTTGAAGAGTTGTACACTTCGACATGCTACCCAAAAGCATACTTTCATGAGATCACTGTGGACATTGTTACTCTTCCAAAGTTGCAGAGGTTTGTACTAAATCATCCAATCACACCAGAAGGGAAAAAAGTTATTCAGGTAGAAGATTTTAATATCTCCAAGTTGAAGGCATTCAAAAAGAATATTATGCAAATAGCTGAAACAATTTCTTTTATAAGCCTCGATGGAGGATGTAAGAATATCATCCCAGATATGGTTGGAGTTGTGGGAGGCATGAATGGTTTGACTTCCCTCCATCTTGCAAGTTGCCAAAAGATAGAATGCATCTTCGATGCAACCTATGATTTCAACGAAGATAATTTGATTTGCAACTTGGTCAAGTTACGCCTTCAGCGTATGGAAAACTTGACACAATTATGTCGAGATCCGCCCATGCAAGTTCTACGCTACCTTGAGAAACTAGAGGAACTTGAAATACAACATTGCATACGGTTATGTAACATATTTCCATCGGAATGTACGTTAAGAAATCTTAAGATCCTCAACTTATCAGATTGCGGGTCTGGTGAAGTACTCTTCTCAGCATCTGTTGCTCAAAGACTTGCACAATTGCAAAATATGTGTATATCACGTGCTCCTAAGCTGGAATATGTGTTTGGTGAATGTTATCAGGAACACCTTTCATCACACCAATACCAAAACCATGTCATGCTTCCTCATTTGGAAGCTCTCAAACTGCTTTATCTTGACAATCTCGTTGGCATGTGTCCAGAGAATTGTCAAGCAAAGTGGCCATCTCAATCTATGAAGATGCTAGTCATACTGGGATGTCCAAAATTGGCTATACCATGGTTCAATTTGAAGGTTGGCTATGATCAGAGACAACATCATCTGAAAGAAGTGAGTACTCATTGA 2187 0.3695 MLDLKLEEESEEGRAQRLWLRLKDKKRILIIVDDLWSEIHLMDIGIRLDNVNRRRWKILVATRNEHVCNLMDCQKKIHLGLLSEDESWTLFQKLARIDDEFCELLDGVPQKVCHECKGLPIAIKTMASSLKGKHNIEWQSTLAKLMDSKVFHDHEGRVMDDLKCLKSSFDCLQNRETELIFLMCCMFPEDYHIPIEDLMRYAIGLRLGRTYSLQSTRNLVQAHINKLLDSCLLMHGCVKMHDMVRDIALWISRRSDNHKILVSIDKLEDASLRDCFAVSSWWYNKNPIFRQWHSPNLKILLLNINESRSWNSLDISHLTFEGIEELKVFSVTIDYYTSQIIPLLLPPSTQLLTNVRTLRLNGFKFGDISFITSLTRLEVLDLRRSHFNEFPNKIGELKRLKLIDLSLCHIFQKTYNGAIGKCLQLEELYTSTCYPKAYFHEITVDIVTLPKLQRFVLNHPITPEGKKVIQVEDFNISKLKAFKKNIMQIAETISFISLDGGCKNIIPDMVGVVGGMNGLTSLHLASCQKIECIFDATYDFNEDNLICNLVKLRLQRMENLTQLCRDPPMQVLRYLEKLEELEIQHCIRLCNIFPSECTLRNLKILNLSDCGSGEVLFSASVAQRLAQLQNMCISRAPKLEYVFGECYQEHLSSHQYQNHVMLPHLEALKLLYLDNLVGMCPENCQAKWPSQSMKMLVILGCPKLAIPWFNLKVGYDQRQHHLKEVSTH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2160g00001 728 SUPERFAMILY L domain-like 239 683 - -
Trme2160g00001 728 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 2 704 - -
Trme2160g00001 728 Gene3D Ribonuclease Inhibitor 478 711 IPR032675 -
Trme2160g00001 728 Pfam NB-ARC domain 8 150 IPR002182 GO:0043531
Trme2160g00001 728 PRINTS Disease resistance protein signature 22 36 - -
Trme2160g00001 728 PRINTS Disease resistance protein signature 116 130 - -
Trme2160g00001 728 PRINTS Disease resistance protein signature 395 411 - -
Trme2160g00001 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 175 IPR027417 -
Trme2160g00001 728 Gene3D Ribonuclease Inhibitor 293 477 IPR032675 -
Trme2160g00001 728 Gene3D - 1 78 IPR027417 -
Trme2160g00001 728 Gene3D - 81 168 IPR042197 -
Trme2160g00001 728 Gene3D - 169 249 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2160g00001 Trme-Chr2160 82 2481 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2160g00001 7 254 WRKY Transcription Factor Family AT5G45050 23.828 2.17e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2160g00001 - - mtr:25488990 887.486