Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21578g00001 ATGGAGGGAATTACCAATGGCCATGCTGAAGCAACTTTTTGTGTGACCAAAAGTGTTGGTGATCCACTCAACTGGGGTGCAGCGGCAGAGTCGTTGACGGGGAGTCATTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACCGTAACCCGTTGGTTAAAATTGGCGGCGAGACGCTTACCATTGCTCAGGTGGCCGGAATTGCTTCTCATGATAGTGGTGTGAGGGTGGAGCTCTCTGAGTCCGCGAGGGCTGGCGTTAAGGCGAGCAGTGATTGGGTGATGGACAGCATGAACAATGGGACTGATAGTTATGGTGTTACCACCGGTTTTGGTGCCACCTCTCACCGGAGAACCAAGCAGGGCGGTGCCTTGCAAAAGGAGCTAATTAGGTAA 393 0.5267 MEGITNGHAEATFCVTKSVGDPLNWGAAAESLTGSHLDEVKRMVEEYRNPLVKIGGETLTIAQVAGIASHDSGVRVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIR 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21578g00001 130 SUPERFAMILY L-aspartase-like 21 130 IPR008948 GO:0003824
Trme21578g00001 130 PANTHER HISTIDINE AMMONIA-LYASE 17 130 IPR001106 -
Trme21578g00001 130 Pfam Aromatic amino acid lyase 59 130 IPR001106 -
Trme21578g00001 130 Gene3D - 12 130 IPR024083 -
Trme21578g00001 130 MobiDBLite consensus disorder prediction 111 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21578g00001 Trme-Chr21578 752 1144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21578g00001 16 130 Monolignol Biosynthesis Gene Families AT3G53260 73.913 1.84e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21578g00001 K10775 - gmx:100811101 208.379