Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21562g00001 ATGCAACAAATGAAAATGCAAGGCTGTGAAGTTGAAGCCATTGGCATAAACTACAAAATCCACACAAACAAAACAGAACACCCTTTTAAAATCTTCAGCAAATCTCCACAACTAGATAATGCCAATGGTCAAGAAATAGAAGAAGAGGAAGAAGCAAGAGTTGAAAAAAGTTGCAGTGGAGTTAGGCATGTACTCAAGAATGTGAGTTTTCAGGCAAGACCATGGGAAATCCTAGCAATTGTTGGACCAAGTGGAGCTGGAAAGTCATCACTACTTGAGATCTTAGCAGGTAAACACAGTCCACAAAAAGGGTCAGTGTTGTTGAACCAAAAGCCTGTTGACAAATCTCAGTTCAGAAAGCTATCAGGTTATGTTACTCAAAAGGACACTTTGTTTCCCTTACTTACAGTTGAAGAAACCATGATGTTCAGTGCAAAACTAAGGCTAAAGCTTCCTCAACAACAACTATGTTCAAGGGTCAAGTCATTGATTCAAGAGCTTGGACTTGATCATGTTGCGGGGACTCGAATTGGTGACGATCGAGTCCGAGGTATATCAGGCGGTGAAAGGCGTAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTTTTGATTCTTGATGAACCAACTTCAGGGCTTGATAGTACTTCAGCTTTGCAAATAATTGATATGCTCAAGGTTATGGCTGAAACTAGGGGAAGAACTATAATACTAAGTATTCATCAACCTGGTTTCAGAATAGTGAAGCTGTTCAATTCATTGTTGTTGTTGGCTAATGGTTCTGTGCTTCATCATGGAACTGCTGAATTACTGAGTTTGAATTTGAGATTGATGGGTCTAGARCTTCCACTACATGTTAATTTAGTTGAATTTGCTATTGATTCCATTGATATCATTCAACAACARCARCAGCAACAATGYCAGGTGGAAACCGAACCGCCGAGACGATTGTTAGGAACAATGCAACAGAAGAAAGGTGGTGATGATGGACAACAACAACAATCAGGTGAGAGTAAAAGTGATTGA 1032 0.3934 MQQMKMQGCEVEAIGINYKIHTNKTEHPFKIFSKSPQLDNANGQEIEEEEEARVEKSCSGVRHVLKNVSFQARPWEILAIVGPSGAGKSSLLEILAGKHSPQKGSVLLNQKPVDKSQFRKLSGYVTQKDTLFPLLTVEETMMFSAKLRLKLPQQQLCSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSLLLLANGSVLHHGTAELLSLNLRLMGLELPLHVNLVEFAIDSIDIIQQQQQQQCQVETEPPRRLLGTMQQKKGGDDGQQQQSGESKSD 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21562g00001 343 SMART AAA_5 74 292 IPR003593 GO:0016887
Trme21562g00001 343 CDD ABCG_EPDR 55 268 - -
Trme21562g00001 343 MobiDBLite consensus disorder prediction 327 343 - -
Trme21562g00001 343 Gene3D - 51 322 IPR027417 -
Trme21562g00001 343 MobiDBLite consensus disorder prediction 311 343 - -
Trme21562g00001 343 FunFam ABC transporter G family member 5 50 310 - -
Trme21562g00001 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 273 IPR027417 -
Trme21562g00001 343 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524|GO:0016887
Trme21562g00001 343 Pfam ABC transporter 65 213 IPR003439 GO:0005524
Trme21562g00001 343 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 13 313 - -
Trme21562g00001 343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 286 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21562g00001 Trme-Chr21562 173 1307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21562g00001 64 269 Calmodulin-binding Proteins AT2G36910 27.778 2.48e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21562g00001 K05681 - gmx:100789722 506.908