Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2154g00001 AATGAATATGAACGCAATTTTATTGAAAAAATAGTTAAAGACGTCTCCAACAAGATTAACCGCATTCCTTTATATGTTGCTGATTACCTTGTTGGACTCAAATCACGAATATTAGAAGTGAATTCACTTCTAAACTTGGAATCTAATGATGGAGTCTGCATAATAGGGGTCCATGGAACTGGAGATAAATATGGCTTAGAATATCTCCAAGAGCAGCTCCTTGACAAAACAGTCAAATTAAACATTAAGATACAAAATGTATCAGAGGGAATTACATTCATAAGGCAAAGACTATCCCAAAAGAAGGTTCTCTTGATTCTTGATGACGTTGACAAATTGAAGCAACTTCAATGTTTGATTGGGGAGCCTAATTGGCTGGGTCAAGGTAGCAAAGTCATCATTACCACTCGAGACAGACACTTGCTAGCAAGCTATGGGGTTGAAAGAACATATGAGGTTTGTGGGTTAAATGAAGAAGAAGCTCTTGAATTGTTTAAATGGAAGGTTCGTAAAAACAAAACGGTTGATTCAAGTTATGAGTATATTTTAAACCGTGCAGTTAACTATGCTTCTGGCCTTCCATTAGCTATTGAAGTTGTGGGTTCCTATTTGGCTGGACAGAAGATTTCAGAATGGGATTCTACATTAGATAAGTATGAAAGGATAATTCCTACTGATATCCAAAGTATACTTGAAATAAGCTATGATGCGTTGGACGAAGAAGTGAAAAGTGTCTTTTTGGATATAGCTTGTTGCTTCAAAGACTATAGATTGGTAAAGGTTGAAGAGATACTTCATGCTCATTATGGTTATTGCATAAAAAATCATGTTGTAGTTTTGGTTGAAAAATCTCTCATAAAAATTAAACATGACAGTGATGTGGAATTACATGATTTGATAGAGCATATGGGTAAAGAAATTGTCCGGCGAGAATCACCCAAAAAGCCTGGAAAACGCAGTAGGTGCGAGAAATCTTCCAAAAAGTTTGAGAGTATTGGAATGGGAAAGATATCCTTCAGAGTCTCCATCTTATTGGTTTTTGAACACGAAGTTCGAGAATATGGTACTTTTGACACTTAA 1080 0.3583 NEYERNFIEKIVKDVSNKINRIPLYVADYLVGLKSRILEVNSLLNLESNDGVCIIGVHGTGDKYGLEYLQEQLLDKTVKLNIKIQNVSEGITFIRQRLSQKKVLLILDDVDKLKQLQCLIGEPNWLGQGSKVIITTRDRHLLASYGVERTYEVCGLNEEEALELFKWKVRKNKTVDSSYEYILNRAVNYASGLPLAIEVVGSYLAGQKISEWDSTLDKYERIIPTDIQSILEISYDALDEEVKSVFLDIACCFKDYRLVKVEEILHAHYGYCIKNHVVVLVEKSLIKIKHDSDVELHDLIEHMGKEIVRRESPKKPGKRSRCEKSSKKFESIGMGKISFRVSILLVFEHEVREYGTFDT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2154g00001 359 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 325 IPR044974 GO:0006952
Trme2154g00001 359 Gene3D - 49 150 IPR027417 -
Trme2154g00001 359 SUPERFAMILY "Winged helix" DNA-binding domain 226 312 IPR036390 -
Trme2154g00001 359 Gene3D - 155 239 IPR042197 -
Trme2154g00001 359 Pfam NB-ARC domain 67 240 IPR002182 GO:0043531
Trme2154g00001 359 PRINTS Disease resistance protein signature 190 204 - -
Trme2154g00001 359 PRINTS Disease resistance protein signature 97 111 - -
Trme2154g00001 359 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 249 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2154g00001 Trme-Chr2154 213 1847 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2154g00001 31 321 WRKY Transcription Factor Family AT5G45050 30.000 1.50e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2154g00001 - - mtr:25483824 390.963