Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21508g00001 ATGGATGAAATAAAGATTCTCAAACAAATTGGAGAGGGTGACCCTGATGACAAGAAATGTGTTGTGAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCATACATGTGTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAATATAGTGACTATCGTGGAGTTCCTCTTTCCATGGTTAAAGAAATATGTTTTCACATTTTGGTGGGCTTGGATTATTTGCACCGCGAGCTTTCTGTCATACACACTGATTTGAAGCCAGAGAATGTATTGCTTCTTTCACTTATAGATCCGTGTAAGGATCCAAGGAAATCAGGTGCTCCACTTATTCTTCCAAACACCAAGGATAAGGCTTTGTCTAATAATGGCACTTTCCAAAACAGTAAAATTGGGAATGGAGATCCGACAAAGAAGAAGAAAATGCAAGGAAATGCTAAGAGGGTGGCTCAAGGCTGTATTGAGAAGGAAAGTCCAGAGGAAGCTGGGGAGGACTTTAAAGAACCCGGACAGGAAAATT 535 0.4019 MDEIKILKQIGEGDPDDKKCVVKLLDHFKHSGPNGIHVCMVFEFLGDNLLTLIKYSDYRGVPLSMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSLIDPCKDPRKSGAPLILPNTKDKALSNNGTFQNSKIGNGDPTKKKKMQGNAKRVAQGCIEKESPEEAGEDFKEPGQEN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21508g00001 178 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21508g00001 178 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 1 166 - -
Trme21508g00001 178 Pfam Protein kinase domain 2 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21508g00001 178 SUPERFAMILY Protein kinase-like (PK-like) 2 99 IPR011009 -
Trme21508g00001 178 Gene3D Phosphorylase Kinase; domain 1 2 44 - -
Trme21508g00001 178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Trme21508g00001 178 SMART serkin_6 4 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21508g00001 178 MobiDBLite consensus disorder prediction 158 178 - -
Trme21508g00001 178 MobiDBLite consensus disorder prediction 127 178 - -
Trme21508g00001 178 Gene3D Transferase(Phosphotransferase) domain 1 13 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21508g00001 Trme-Chr21508 80 614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21508g00001 1 125 EF-hand Containing Proteins AT5G22840 82.400 2.58e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trme21508g00001 Pkinase 2.1e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21508g00001 K08832 - gmx:100790060 296.975