Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme214759g00001 ATGAGTCTTGGTGCTCAGAATTGGATCTCTGGTAACAATGGTGATACTCATAATATTCACAGGAGGAGTTATTCTGCAAATGATGCTAGTTTTGGTGTTGAAGAAAGTGGACTAGGATTTGGTTTTAAACCATGTCTTTACTTTGCTAGAGGGTTTTGTAAAAATGGTTCTAATTGCAAGTTTGTTCATGGTGATTCAATTGATGCTAATTCTGCTGCTATTGTTGGTTCACCCTCTAAGTTTGAGGGATTGGAACAGCATGAAGAGTTCATGAGGTTCAAGGCTGCTCAGCATCAAAGATTGGTTGCTGCATCACAACTTGCTGCTGGTGGAACATCGCCGTCTTCGTACGACAAGTACATTGACTTTCTGATGCAGCAGCACAATGAT 390 0.4077 MSLGAQNWISGNNGDTHNIHRRSYSANDASFGVEESGLGFGFKPCLYFARGFCKNGSNCKFVHGDSIDANSAAIVGSPSKFEGLEQHEEFMRFKAAQHQRLVAASQLAAGGTSPSSYDKYIDFLMQQHND 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme214759g00001 130 Gene3D - 41 99 - -
Trme214759g00001 130 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Trme214759g00001 130 SMART c3hfinal6 41 65 IPR000571 GO:0046872
Trme214759g00001 130 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 41 64 IPR000571 GO:0046872
Trme214759g00001 130 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 16 114 - -
Trme214759g00001 130 SUPERFAMILY CCCH zinc finger 42 64 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme214759g00001 Trme-Chr214759 1 390 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme214759g00001 zf-CCCH 9.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme214759g00001 - - lang:109331755 177.563