Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21465g00001 ATGATGGGAACTGGTTACGTGTGGATAGCCACTGCTTTTCTTTCTGCTATTCTTGATATAAGTAGTCCTCTATCTTCTGATAGAATGGATGAAATCCAAGGAGTGTTGACACCGCGCGTGTACACGCCGGATTCGGAGCTTAAAAGAAAGTTTGTTTCTAAGTGGAAAAACTTGACTCATGGAAATACTGCCAATGGCCCTCTTGGACTCAGTTTTTTGTCTCTCTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACAAAATCACATTCTCAAATGACTCAAAGTTATCTTCACTAAAAGGAGACAACTTGCATCTTGATGCATTGAACGTTTTCGATGAAGGATACTCGTTACGTAGAAACATTTACGAGGTTAACATGACAGGTGTGACAGGTTTGTTCAAGTATGGACCTGATAAAAACCTTGTTAATCCTGCATATGAAATCATGAATGTGGTTGGAACCGGGACTCGAAGGATTGGTTATTGGTCTAATCACTCTGGATTATCAGTCATTCCTCCAGAAACACTGCTTTCCAAACCAGGTAATGATTTCAGGGAAAGTACAAAGTTATTACCTGTGATTTGGCCGGGAGACACGGCTCAGAAGCCTCGCGGTTGGGTTTTTCCTAACAACGGAAGGCTATTAAGAATTGGAGTACCAATAGGAGTAAGTTACCAACAATTTGTGTCACAAGTACCAGGCACCGATACATTTCAAGGCTTCTGCATTGATGTGTTTCTTTCTGCAGTTAACCTTTTGCCTTATGCTGTTCCCTATAAGTTTATTCCATATGGGGATCATAAGAACAATCCTAGTAACAGCGAGCTTGTCCGCCGGATAACAACCGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATAGTGGATTTTACTCAGCCATTTGTTGAGTCTGGTTTAGTGGTAGTAGCACCTGTTAAGGAGGCAGATACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGGATGTGGTTTGTCACAGCTGTCTTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAGAAAACAAGT 1145 0.4087 MMGTGYVWIATAFLSAILDISSPLSSDRMDEIQGVLTPRVYTPDSELKRKFVSKWKNLTHGNTANGPLGLSFLSLYAYDTIYALAHALDAFFKQGNKITFSNDSKLSSLKGDNLHLDALNVFDEGYSLRRNIYEVNMTGVTGLFKYGPDKNLVNPAYEIMNVVGTGTRRIGYWSNHSGLSVIPPETLLSKPGNDFRESTKLLPVIWPGDTAQKPRGWVFPNNGRLLRIGVPIGVSYQQFVSQVPGTDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDHKNNPSNSELVRRITTGEFDGAVGDIAITTERTKIVDFTQPFVESGLVVVAPVKEADTSALAFLAPFTPRMWFVTAVFFIIVGTVVWILEHRVNDEFRGPPRKQV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21465g00001 382 SMART GluR_14 227 376 IPR001320 GO:0015276|GO:0016020
Trme21465g00001 382 SUPERFAMILY Periplasmic binding protein-like I 1 218 IPR028082 -
Trme21465g00001 382 Pfam Receptor family ligand binding region 1 164 IPR001828 -
Trme21465g00001 382 FunFam Glutamate receptor 221 337 - -
Trme21465g00001 382 Gene3D - 21 152 - -
Trme21465g00001 382 Gene3D - 338 381 - -
Trme21465g00001 382 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 381 IPR015683 -
Trme21465g00001 382 Pfam Ligated ion channel L-glutamate- and glycine-binding site 242 328 IPR019594 GO:0004970|GO:0016020
Trme21465g00001 382 SUPERFAMILY Periplasmic binding protein-like II 201 354 - -
Trme21465g00001 382 Gene3D - 221 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21465g00001 Trme-Chr21465 1 1233 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21465g00001 1 382 Ion Channels AT1G42540 57.552 4.64e-152 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21465g00001 K05387 - gmx:100785258 631.713