Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme214356g00001 ATGTGGGGTTACTCAACTAATTTATTGTTATATGATGATCCTTGGAAGATCAAGAAAGTGTTGGAACAGAGTGACATTGACCGTTCGAGTAGACTGTTGCTAGATAAAAAATTGGTTGAAGATTTGGTGTTGCCTGTATTGAATGCTAATGATGATGATCTTGTGAAAGGAATTCAGGTGAAAATATGGGATATTGAGACCAACTCCATGCACTTTCTCAAACTCAAGAGATGGTCTTCTTCAAGAAGCTATGTTTTCATCGACGGATGGATTAGAGATTTTGTAACTAGAAAGGGTTTACAAAAAGGAGATGAGATTCGTCTTCATTGGGATCAATACAACCAACACTTTAATTTCTCTGTTCTTCGAGCCCATCAGGATTGA 384 0.3724 MWGYSTNLLLYDDPWKIKKVLEQSDIDRSSRLLLDKKLVEDLVLPVLNANDDDLVKGIQVKIWDIETNSMHFLKLKRWSSSRSYVFIDGWIRDFVTRKGLQKGDEIRLHWDQYNQHFNFSVLRAHQD 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme214356g00001 127 SUPERFAMILY DNA-binding pseudobarrel domain 13 123 IPR015300 -
Trme214356g00001 127 CDD B3_DNA 15 123 IPR003340 GO:0003677
Trme214356g00001 127 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 124 - -
Trme214356g00001 127 Gene3D - 14 126 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme214356g00001 Trme-Chr214356 3 386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme214356g00001 17 111 B3 DNA Binding Superfamily AT3G24650 34.737 1.07e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme214356g00001 - - lang:109331497 162.155