Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme213356g00001 ATGTCTAAGGCTCTGGTCATAATCTTGGTGGTAGTAGCTTCGTTAACGGTTTTCTTGGTGGTATTCTTGACGATCAGTTTTTACAGAAAAAGAAAGCCATTAATGAAAAGGACATGGAAGCCAACTTCATTTCAGAGGCTGAGTTTCACAAAATCAAACATTGTGTCTTCGATGTCAGAACATAATATCATCGGTAGCGGTGGATTTGGTTCTGTTTATCGCGTCGCTGTTGAGGGTTTAGGCTATGTCGCAGTGAAAAAGATAAGAGGAAATAGCAAAAAGTTGGATCAGAAGCTTGTGGATTCATTTCTTGCAGAAGTTGAAATACTTAGCAACATTCGGCATAACAATATTGTGAAGTTGATGTGTTGTATCTCAAGTGATGATTCGCTACTCCTT 399 0.3885 MSKALVIILVVVASLTVFLVVFLTISFYRKRKPLMKRTWKPTSFQRLSFTKSNIVSSMSEHNIIGSGGFGSVYRVAVEGLGYVAVKKIRGNSKKLDQKLVDSFLAEVEILSNIRHNNIVKLMCCISSDDSLLL 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme213356g00001 133 Pfam Protein kinase domain 60 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme213356g00001 133 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Trme213356g00001 133 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 132 - -
Trme213356g00001 133 Gene3D Phosphorylase Kinase; domain 1 39 133 - -
Trme213356g00001 133 SUPERFAMILY Protein kinase-like (PK-like) 44 130 IPR011009 -
Trme213356g00001 133 ProSiteProfiles Protein kinase domain profile. 58 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme213356g00001 Trme-Chr213356 1 399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme213356g00001 5 133 Receptor kinase-like Gene Family AT5G25930 52.308 3.88e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme213356g00001 Pkinase 2.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme213356g00001 - - gmx:100785907 174.481