Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21314g00001 TATGTGGCAATTCAAGCTGTCCTTTCACTCTACGCCAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACACGCCATCCTTCGTCTTGATTTGGCTGGTCGCGACCTCACTGATTTCTTGATGAAAATTCTGACAGAACGTGGGTATTCTTTTACCACCTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTGGCGTACATTGCCCTTGACTATGAGCAAGAGCTAGAAACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGGTGATCACTATTGGCGCTGAGCGTTTTAGGTGTCCAGAGGTCTTATACCAACCATCAATGGTGGGAATGGAAGCTGCAGGAATTCATGAGACCACATATAACTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTACGGTAACATTGTCCTTTCAGGAGGTACAACTATGTTCCCTGGAATTGCTGATAGAATGAGCAAGGAAATTTCTGCATTAGCCCCTAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCCTTGAGCACTTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA 732 0.4577 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21314g00001 243 PRINTS Actin signature 8 27 IPR004000 -
Trme21314g00001 243 PRINTS Actin signature 104 120 IPR004000 -
Trme21314g00001 243 FunFam Actin, muscle 48 139 - -
Trme21314g00001 243 PANTHER ACTIN 1 236 IPR004000 -
Trme21314g00001 243 ProSitePatterns Actins signature 2. 224 232 IPR004001 -
Trme21314g00001 243 CDD NBD_sugar-kinase_HSP70_actin 1 49 - -
Trme21314g00001 243 Gene3D Actin; Chain A, domain 4 55 142 - -
Trme21314g00001 243 FunFam Actin, alpha skeletal muscle 196 243 - -
Trme21314g00001 243 Pfam Actin 1 243 IPR004000 -
Trme21314g00001 243 SUPERFAMILY Actin-like ATPase domain 15 243 IPR043129 -
Trme21314g00001 243 FunFam Actin, alpha skeletal muscle 122 195 - -
Trme21314g00001 243 SMART actin_3 1 243 IPR004000 -
Trme21314g00001 243 Gene3D - 204 243 - -
Trme21314g00001 243 FunFam Actin, alpha skeletal muscle 4 64 - -
Trme21314g00001 243 Gene3D - 6 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21314g00001 Trme-Chr21314 1 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21314g00001 1 243 Cytoskeleton Gene Families AT3G12110 95.885 3.21e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21314g00001 K10355 - gmx:100798523 478.789