Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme213125g00001 GTAAGGTATCCAGACCGGATAACACTCATTAGGGGAAACCATGAAAGTCGTCAGATCACACAGGTATACGGTTTCTATGACGAGTGCCTTCGGAAGTATGGTTCAGTAAATGTATGGAGATATTGTACTGACATATTCGATTACTTAAGGTTTGCTGCTATCTAG 165 0.4121 VRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLRFAAI 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme213125g00001 54 PRINTS Serine/threonine phosphatase family signature 9 33 IPR006186 GO:0016787
Trme213125g00001 54 PRINTS Serine/threonine phosphatase family signature 44 54 IPR006186 GO:0016787
Trme213125g00001 54 Gene3D - 1 54 IPR029052 -
Trme213125g00001 54 Pfam Calcineurin-like phosphoesterase 2 53 IPR004843 GO:0016787
Trme213125g00001 54 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 54 IPR047129 GO:0004722
Trme213125g00001 54 ProSitePatterns Serine/threonine specific protein phosphatases signature. 10 15 IPR006186 GO:0016787
Trme213125g00001 54 SUPERFAMILY Metallo-dependent phosphatases 2 54 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme213125g00001 Trme-Chr213125 121 400 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme213125g00001 1 54 Calmodulin-binding Proteins AT5G63870 48.214 2.55e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme213125g00001 K15423 - ptm:GSPATT00034087001 112.849