Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21280g00001 ATGGAATCTAAACCCTTGAACGCTATTAAGATCCTCTATAGCTACGGTGGCAAAATCCTTCCTCGTTCCACTGACGGTGAACTCCGTTACGTCGGCGGTCACACCAGAGTTCTCTCCGTTGATCGTTCAATTTCATTCTCAGAATTGATGGAGAAACTCGAAGAATTGTGTGGTTCATCTGTGAAGTTAAGGTTTCAATTACCAAACGGAGACTTGGAAACGTTGATCTCCATCACCAACGATGAAGATTTAGCCAATATAATCGATGAATACGAACGTGTCTCGTTGAAATTAACTCATCCGTTGAAGATCAGAGCCATTCTTTCGCAGCCGAAATTGCTCGTGAAAGTTTCTTCTGATCCGTCGTCTGCTTCGTCCAGTGCCAGTCTTTCTCCGTCAAGATCGCCTCATACCTCCGCTGAATCGCTGCCGTACGCGGTGGCGTATCNCATCGGACGACATAGTCGCTCGCCGCGTGCGCCGTTCGGTTATTCGTTCGGCGTCAGGAATGGATCGGCGAAAGCTTGTTGCAATATGGGCCAGTTCTGTGGAAGCCCAAGGTCCTTGTATTATGGGCCTCGTTGCAATAATTACTGCCATTAA 603 0.476 MESKPLNAIKILYSYGGKILPRSTDGELRYVGGHTRVLSVDRSISFSELMEKLEELCGSSVKLRFQLPNGDLETLISITNDEDLANIIDEYERVSLKLTHPLKIRAILSQPKLLVKVSSDPSSASSSASLSPSRSPHTSAESLPYAVAYXIGRHSRSPRAPFGYSFGVRNGSAKACCNMGQFCGSPRSLYYGPRCNNYCH 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21280g00001 200 Gene3D - 29 110 - -
Trme21280g00001 200 PANTHER OS05G0427100 PROTEIN-RELATED 3 130 - -
Trme21280g00001 200 Pfam PB1 domain 26 97 IPR000270 GO:0005515
Trme21280g00001 200 CDD PB1_UP2 14 108 - -
Trme21280g00001 200 SUPERFAMILY CAD & PB1 domains 25 109 - -
Trme21280g00001 200 SMART PB1_new 23 102 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21280g00001 Trme-Chr21280 556 1249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21280g00001 1 94 MAP Kinase Kinase Kinase AT3G46920 42.553 1.03e-24 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21280g00001 - - vra:106761207 246.899