Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21266g00001 ATTTTCTATGATGTTGATCCATCTGAGGTGAGACACCAAAAAGGAAGTTATGATAAAGCCTTTGAAAAACATGAAGAAAGGCTCCAGCATGACTTAGAGGTGGTGAGAAGATGGAGAACAACTCTGACACGAGTGGCCAATATCTCCGGCTGGGATTTACGCCACAAGCTTCAATATGCGGAGATTGAAAGGATTGCTCAACAGATAATGAATTCATTGGGTCACAAGTTTTCAAGCCTACCAAGAGATTTAGTGGGGATGGCTTCTCCTTTAGAAGAATTGGAAGAACAATTATTTTTGGATTCGGCTAATGATGTTCGGGTTGTAGGAATTTGCGGGATGAGAGGAATAGGGAAATCAACTCTTGCTGCTGTTTTATATGACAGAATCTTTCATGAATTTGAAGCATGTTGTGTTATCGATGATGTGAGCAAAATTTATAGAGTAAATGGCCCGATTGGTGCACAAAAGCAAATTCTACGTCAAACACTAAAGGAAGAACACCTTCGGGAAGTAGAATCGTTATAA 528 0.3977 IFYDVDPSEVRHQKGSYDKAFEKHEERLQHDLEVVRRWRTTLTRVANISGWDLRHKLQYAEIERIAQQIMNSLGHKFSSLPRDLVGMASPLEELEEQLFLDSANDVRVVGICGMRGIGKSTLAAVLYDRIFHEFEACCVIDDVSKIYRVNGPIGAQKQILRQTLKEEHLREVESL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21266g00001 175 Gene3D - 70 175 IPR027417 -
Trme21266g00001 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 168 IPR027417 -
Trme21266g00001 175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 167 IPR044974 GO:0006952
Trme21266g00001 175 Pfam TIR domain 1 79 IPR000157 GO:0007165
Trme21266g00001 175 SUPERFAMILY Toll/Interleukin receptor TIR domain 1 51 IPR035897 -
Trme21266g00001 175 Gene3D - 1 69 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21266g00001 Trme-Chr21266 1 800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21266g00001 1 167 WRKY Transcription Factor Family AT4G12020 26.946 8.10e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21266g00001 - - tpra:123888576 294.278