Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trme21252g00001 | GGTCCTGGAAGTTCTTTTAAGTGTGCTAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTGAATCAGTATGAATCGAGGTCATTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTATACCTCTCAAGGCTGGAGTTATCGAGCTTGGTTCGATGGAGATGGTGCCTGAAGAGCAGGGTTTTTTGGATATGGTCAAGACAACATTTGGAGAATCTACTTCTGGACAGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGCCTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCTAAGGTGGAAGATGATTCTGGTTTCACTTCCGACTCTTATGAAGTACAAGCGCTTGGGGCCAACCATGCTTATGGTAATTCTTCCAATGGAGGTGTAGGAGATAGTAATGATGCAAAAATGTTCCCTCAGTTAAGTCAAATGGTTCCTGGGAATTTTACTTCTCAAGCAAGAGTTTCTTCTTCTATTGATTTGGGTAATGAAGACTCATCCTCGCCTCTCGGAGACGAGCGGAAGCCTAGGAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCGGAAAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTACGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGTGATGCTATAACCCATATCACTGATCTCCAGAAGAAGATCAAGCTGTTGGAAACCGAAAAAAGCATGGTTAATAATAAGGGCCAGCAGTTGTCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGACGCGGTTGTGCGAGTTAGCTGCCCCTTGGATATTCACCCGGTTTCTGGAATCGTTAAAGTGTTCAGAGAGCATCAAATTGCAGCTCAAGAGGCCAATGTTTCAACTGCACAGGATAAGGTAATTCATACATTCTCTATCAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTTGAAGCATCTTTAGCCAAAAATTAA | 1050 | 0.4333 | GPGSSFKCAKPNWSSDAGSCLNQYESRSFLAKSAGFQTVVFIPLKAGVIELGSMEMVPEEQGFLDMVKTTFGESTSGQAKAAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNDAKMFPQLSQMVPGNFTSQARVSSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKSMVNNKGQQLSLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIAAQEANVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLAKN | 349 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trme21252g00001 | 349 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 197 | 246 | IPR011598 | GO:0046983 | |
Trme21252g00001 | 349 | MobiDBLite | consensus disorder prediction | 165 | 208 | - | - | |
Trme21252g00001 | 349 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 200 | 269 | IPR036638 | GO:0046983 | |
Trme21252g00001 | 349 | CDD | bHLH_AtAIB_like | 194 | 257 | - | - | |
Trme21252g00001 | 349 | MobiDBLite | consensus disorder prediction | 176 | 208 | - | - | |
Trme21252g00001 | 349 | PANTHER | MYC | 2 | 345 | IPR045084 | GO:0003700|GO:0006355 | |
Trme21252g00001 | 349 | Pfam | Helix-loop-helix DNA-binding domain | 201 | 247 | IPR011598 | GO:0046983 | |
Trme21252g00001 | 349 | SMART | finulus | 203 | 252 | IPR011598 | GO:0046983 | |
Trme21252g00001 | 349 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 2 | 71 | IPR025610 | - | |
Trme21252g00001 | 349 | Coils | Coil | 243 | 263 | - | - | |
Trme21252g00001 | 349 | Gene3D | - | 190 | 263 | IPR036638 | GO:0046983 | |
Trme21252g00001 | 349 | FunFam | Transcription factor bHLH13 | 190 | 264 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trme21252g00001 | Trme-Chr21252 | 285 | 1334 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trme21252g00001 | 1 | 348 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G16430 | 52.000 | 1.06e-125 | 367 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Trme21252g00001 | bHLH-MYC_N | 2.5e-16 | CL0161 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trme21252g00001 | - | - | gmx:100819968 | 536.954 |