Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21252g00001 GGTCCTGGAAGTTCTTTTAAGTGTGCTAAACCGAATTGGTCTTCTGATGCTGGTAGTTGTTTGAATCAGTATGAATCGAGGTCATTTCTGGCTAAATCGGCTGGTTTTCAAACTGTTGTTTTTATACCTCTCAAGGCTGGAGTTATCGAGCTTGGTTCGATGGAGATGGTGCCTGAAGAGCAGGGTTTTTTGGATATGGTCAAGACAACATTTGGAGAATCTACTTCTGGACAGGCTAAGGCAGCACCGAAGATTTTTGGGCACGAGTTAAGCCTAGGGGATACAAAATCTCAGTCCATAACTATTAGTTTCTCCCCTAAGGTGGAAGATGATTCTGGTTTCACTTCCGACTCTTATGAAGTACAAGCGCTTGGGGCCAACCATGCTTATGGTAATTCTTCCAATGGAGGTGTAGGAGATAGTAATGATGCAAAAATGTTCCCTCAGTTAAGTCAAATGGTTCCTGGGAATTTTACTTCTCAAGCAAGAGTTTCTTCTTCTATTGATTTGGGTAATGAAGACTCATCCTCGCCTCTCGGAGACGAGCGGAAGCCTAGGAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCGGAAAGGCAAAGACGGGAGAAACTTAACCAGAGATTTTACGCCTTAAGAGCTGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGTGATGCTATAACCCATATCACTGATCTCCAGAAGAAGATCAAGCTGTTGGAAACCGAAAAAAGCATGGTTAATAATAAGGGCCAGCAGTTGTCATTGCAAGATATCGATTTTCAGGCTAGACAGGATGACGCGGTTGTGCGAGTTAGCTGCCCCTTGGATATTCACCCGGTTTCTGGAATCGTTAAAGTGTTCAGAGAGCATCAAATTGCAGCTCAAGAGGCCAATGTTTCAACTGCACAGGATAAGGTAATTCATACATTCTCTATCAGAACTCAAGGAGGGGAAGCAGCTGCTGTACAGTTGAAAGAAAAGCTTGAAGCATCTTTAGCCAAAAATTAA 1050 0.4333 GPGSSFKCAKPNWSSDAGSCLNQYESRSFLAKSAGFQTVVFIPLKAGVIELGSMEMVPEEQGFLDMVKTTFGESTSGQAKAAPKIFGHELSLGDTKSQSITISFSPKVEDDSGFTSDSYEVQALGANHAYGNSSNGGVGDSNDAKMFPQLSQMVPGNFTSQARVSSSIDLGNEDSSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKSMVNNKGQQLSLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVFREHQIAAQEANVSTAQDKVIHTFSIRTQGGEAAAVQLKEKLEASLAKN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21252g00001 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Trme21252g00001 349 MobiDBLite consensus disorder prediction 165 208 - -
Trme21252g00001 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 269 IPR036638 GO:0046983
Trme21252g00001 349 CDD bHLH_AtAIB_like 194 257 - -
Trme21252g00001 349 MobiDBLite consensus disorder prediction 176 208 - -
Trme21252g00001 349 PANTHER MYC 2 345 IPR045084 GO:0003700|GO:0006355
Trme21252g00001 349 Pfam Helix-loop-helix DNA-binding domain 201 247 IPR011598 GO:0046983
Trme21252g00001 349 SMART finulus 203 252 IPR011598 GO:0046983
Trme21252g00001 349 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 2 71 IPR025610 -
Trme21252g00001 349 Coils Coil 243 263 - -
Trme21252g00001 349 Gene3D - 190 263 IPR036638 GO:0046983
Trme21252g00001 349 FunFam Transcription factor bHLH13 190 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21252g00001 Trme-Chr21252 285 1334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21252g00001 1 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 52.000 1.06e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme21252g00001 bHLH-MYC_N 2.5e-16 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21252g00001 - - gmx:100819968 536.954