Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21251g00001 GGGTATGTGAAGAATCTTGAAACAGGAATTTTACTTTATGGGCCTCCAGGTTGTGGTAAAACGCTGATCGCCAAAGCTGTTGCCAATGAGGCCGGTGCTAATTTCATTCATGTTAAGCGTGGTGAAGAAGGTGGACGAGTTATTGAAGGAGTGTTGACCCAGTTGCTGATTGAGTTACATGGTGGAGATCAGCGCAAAGGTGTTTTCGTGATCGGTGCAACAAACAGGCCTGAGACGATGGACCCTGCTGTCTTACGACCTGATAGATTTG 271 0.4686 GYVKNLETGILLYGPPGCGKTLIAKAVANEAGANFIHVKRGEEGGRVIEGVLTQLLIELHGGDQRKGVFVIGATNRPETMDPAVLRPDRF 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21251g00001 90 ProSitePatterns AAA-protein family signature. 68 86 IPR003960 GO:0005524|GO:0016887
Trme21251g00001 90 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 90 IPR027417 -
Trme21251g00001 90 Gene3D - 6 40 IPR027417 -
Trme21251g00001 90 Gene3D - 43 90 IPR027417 -
Trme21251g00001 90 PANTHER AAA-FAMILY ATPASE 7 40 - -
Trme21251g00001 90 Pfam ATPase family associated with various cellular activities (AAA) 10 42 IPR003959 GO:0005524|GO:0016887
Trme21251g00001 90 Pfam ATPase family associated with various cellular activities (AAA) 45 90 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21251g00001 Trme-Chr21251 22 952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21251g00001 8 90 Calmodulin-binding Proteins AT3G56690 40.157 2.41e-21 84.7