Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme212430g00001 ACGAGGACGGAATCCTCCCCTGATTGCATACAAATACCATCTGATGGAGCTGATGTCTGGGAAATTGATCCCAGCCAGCTAAAATATGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTTCAGAGGCAGTTATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAGTACAGATATGCTGAAAGAGTTTGCACAGGAAGTTTATATCATGAG 230 0.4217 TRTESSPDCIQIPSDGADVWEIDPSQLKYENKVGSGSFGDLFRGSYCSQDVAIKVLKPERISTDMLKEFAQEVYIM 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme212430g00001 76 ProSiteProfiles Protein kinase domain profile. 27 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme212430g00001 76 SUPERFAMILY Protein kinase-like (PK-like) 13 76 IPR011009 -
Trme212430g00001 76 Gene3D Phosphorylase Kinase; domain 1 17 76 - -
Trme212430g00001 76 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme212430g00001 Trme-Chr212430 28 348 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme212430g00001 1 76 MAP Kinase Kinase Kinase AT4G35780 63.158 4.03e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trme212430g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme212430g00001 - - vum:124820684 142.51