Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21242g00001 AAGCTTCACACAACACACTCACCTCAATTCCTTGGTCTTAATCCCTACAAAGGAGCATGGCCAGCCTCTGATTTTGGCAAAGATATCATTGTTGGTGTGATTGACACTGGTGTTTGGCCAGAAAGTGAAAGTTTCAATGATAAGGGAATGACTAAAATTCCTTCAAAATGGAAAGGCCAATTATGTCAATTTGAAAATACCAACAATTCATCTTTGTGTAACAAGAAACTCATTGGAGCAAGGTACTTTAACAAAGGATTCTTGGCGAAATATTCAAATATTAGTAGAACAATTGTGAACACGACACGTGACATATCCGGTCATGGGACCCACACTTCATCAATAGCAGCTGGAAGAAGAGTAGATGATGCATCTTTTGTTGGTTTAGCAAATGGAACAGCATCAGGAATAGCTCCATTGTCTAGACTAGCCATTTACAAGGTTGTGTGGGGAAAAGATGAAGTTGTATCTGATGCTTTAGCTGGAATTGATGCCGCAATATCAGACGGTGTTGATGTTCTTTCAATGTCATTAGGCTATAACAGAAATGTGCCTTTGTATGAAGATGCTATTGCTATAGCAACATTTGCAGCTATGGAAAAAGGTGTTTTTGTTTCTGCTTCGGCCGGTAATGAAGGACCTTCCTTTAATACTATGAGCAATGGAATACCATGGGTGACAACTGTTGCTGCTAGTACTTTAGATCGCGAATTTCATGGAAATCTTACACTTGGTAATGGAGTCTCACTCACTGGCTTCTCTTTTTATCTTGGTGAATTCTCTGCTAGTAATTTTCCAATTGTTTTCATGGGTATGTGTGACAACATTAAAGAACTAATCAAAGTGAAGAGCAAGATTGTGGTTTGTGAAGATAAGAATGGAACTTTTCTTAATTTTGTTAAACTAATTAACAATGTGGGTGGAGCCAAACTTGTTGGAAGTGTTATCATAACAAACATATCAAATACCGATGAATTTCAATTCTCATATGCGCTCCCATCAATCATTATTAACCCAAAAGATGGAGAAATTGTCAAAGATTTCATCAAGAGAACCTCTGGTAGTGGTTCAATTGCAAAAATGTCATTCAAGATAACATCTTTAGGTGCTAAACCAGCGCCTAGTGTCGATTTTTATAGTTCAAGAGGACCTTCAAAGATTTGTCCATATGTTTTGAAACCTGACATTACAGGTCCTGGTACATCAATCTTAGCAGCATGGCCCACAAATATTCCTGTGTTGGATTTTAACTCTTATAATTTTGGATATTTTAAACTCTTCAACAAGTTCAAGTTTGCAACCGGAACATCTATGTCATGTCCTCATGTTGCTGGT 1335 0.3753 KLHTTHSPQFLGLNPYKGAWPASDFGKDIIVGVIDTGVWPESESFNDKGMTKIPSKWKGQLCQFENTNNSSLCNKKLIGARYFNKGFLAKYSNISRTIVNTTRDISGHGTHTSSIAAGRRVDDASFVGLANGTASGIAPLSRLAIYKVVWGKDEVVSDALAGIDAAISDGVDVLSMSLGYNRNVPLYEDAIAIATFAAMEKGVFVSASAGNEGPSFNTMSNGIPWVTTVAASTLDREFHGNLTLGNGVSLTGFSFYLGEFSASNFPIVFMGMCDNIKELIKVKSKIVVCEDKNGTFLNFVKLINNVGGAKLVGSVIITNISNTDEFQFSYALPSIIINPKDGEIVKDFIKRTSGSGSIAKMSFKITSLGAKPAPSVDFYSSRGPSKICPYVLKPDITGPGTSILAAWPTNIPVLDFNSYNFGYFKLFNKFKFATGTSMSCPHVAG 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21242g00001 445 CDD Peptidases_S8_3 1 234 IPR034197 -
Trme21242g00001 445 CDD PA_subtilisin_like 241 353 - -
Trme21242g00001 445 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 445 IPR045051 -
Trme21242g00001 445 Gene3D Peptidase S8/S53 domain 28 445 IPR036852 GO:0004252|GO:0006508
Trme21242g00001 445 SUPERFAMILY Subtilisin-like 2 445 IPR036852 GO:0004252|GO:0006508
Trme21242g00001 445 PRINTS Subtilisin serine protease family (S8) signature 104 117 IPR015500 -
Trme21242g00001 445 PRINTS Subtilisin serine protease family (S8) signature 26 45 IPR015500 -
Trme21242g00001 445 PRINTS Subtilisin serine protease family (S8) signature 434 445 IPR015500 -
Trme21242g00001 445 Pfam Subtilase family 26 445 IPR000209 GO:0006508|GO:0008236
Trme21242g00001 445 ProSiteProfiles Serine proteases, subtilase domain profile. 1 445 - -
Trme21242g00001 445 ProSitePatterns Serine proteases, subtilase family, serine active site. 435 445 IPR023828 -
Trme21242g00001 445 Gene3D - 235 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21242g00001 Trme-Chr21242 1 1335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21242g00001 1 445 Subtilisin-like Serine Gene Family AT5G67090 43.545 3.50e-116 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21242g00001 - - lja:Lj0g3v0171039.1 535.798