Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme212052g00001 ATGATGATCATACATATGCTAATCGAAATTTCTCGATCCGTCACTGCAGAAACAAAAGAAGGGTTGTTTCCAAGTTGGTTTTCTAGGCAAGAGAAGAAGCTGTTACAGACTAACTCTTCAATAAGGTTCAATCTTGTGGTTGCAAAAGATGGTTCTGGACATTTTAAGACTGTGCAAGCTGCTCTAGATGCTGCTGCTAAGAGAAAATATAAGACAAG 218 0.3853 MMIIHMLIEISRSVTAETKEGLFPSWFSRQEKKLLQTNSSIRFNLVVAKDGSGHFKTVQAALDAAAKRKYKT 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme212052g00001 72 Gene3D - 8 72 IPR012334 -
Trme212052g00001 72 SUPERFAMILY Pectin lyase-like 42 68 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme212052g00001 Trme-Chr212052 25 242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme212052g00001 13 69 Carbohydrate Esterase AT5G51500 63.158 2.15e-17 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme212052g00001 K01051 - rcu:8266060 79.3369