Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2119g00001 ATGTCAACCAATGCTCCCCAAATAAATTATGATGTTTTTGTAAGCTTTAGGGGCGATGACATCCGCCGCAACTTTCTTGGTCATTTGGTTGATGCTTTTCATCGAGAGCAAATCAATGCCTTTGTAGACTACAAAATTAATAAGGGAGATGAAATACTACATGCACTTGATGAAGCAATTGAAGGATCATCCATTTCATTGATCATATTCTCAAAAAACTATGCTTCTTCACGTTGGTGTTTAGATGAACTTGTGAAAATAATTGAGTGCAAAGAGAGTTATGGACAAATTATAATACCTGTTTTCTATGAGGTTGATCCTAGAGATGTACGACATCAAGAGAAGAGTTATCAAACTTCATTTGCTGAACTTGAAGAAAAGAACTATAATTTGTCTACGTTGGAGAAATGGAGACGCGCTTTGAACAAATCTGCTGCTGTGGCAGGAATTGAGTTGTCAAAGTATCGGGATGATGCCAAGCTGCTCAAAGAAATCATCAATGTTGTGTTGAAGAATATGAGTAAGCACCCAGTTAACTCTCAAGTACTTGTTGGAATTGACAGACCAATTGCACATTTGAAATCATTGTTAAAGAAAGAGTCAGAAAAGGTCCGTGTCATTGGAATATGGGGAGAAGATGTGAAAATTAATACACCAAAAAGTTTGTCCGATGATATTGTGAGGCGGGTTGGCCAAATGAAGGTTCTTATTGTTCTTGATGATGTCAAAAATACAAATCAGCTAGAGATGTTATTTGGAACTCTTGATTGGTTTCGACCAGATAGTAGAATAATCTTAACATCTAGAGATAAGCAAGTACTTATTGCTAATGAAGTTGACGATGAAGATATATACGAGGCAGGGGTATTGAGTTCTGATGAAGCACTTGAGCTTTTTAATTTGAAGGCCTTCAGACAGAATAACCAACTTAAAATGGAAGAGTACTATGAGCTATCAAATAGTTTTGTCGATTATGCCGGAGGCATTCCATTAGTTCTTGAAATTTTGGGTTGTCTTCTTCGTGGAAAAGAAAAGGAATTTTGGGAAAGTCAGTTAGACAAACTCAAAAGAGAGCCAATTAAAGAAGTTTATGATGTAATGAGACTCAGTTATGATGATCTTGATCGCCTAGAGCAAAATATTTTTTTAGATATTGCATGTTTCTTCAATGGGTTGAATTTGAAAGTGGATTACATGAAACTTTTATTGAAAGATCGTGAAAATGATAATTCAGTGGCTGTTGGATTGTTCGCCAAGAATCTGGGGAAGACCCAGGAAGCTGCAGTCGATTATGGGATTCTGATGACATTTGTGATGTATTGA 1323 0.3636 MSTNAPQINYDVFVSFRGDDIRRNFLGHLVDAFHREQINAFVDYKINKGDEILHALDEAIEGSSISLIIFSKNYASSRWCLDELVKIIECKESYGQIIIPVFYEVDPRDVRHQEKSYQTSFAELEEKNYNLSTLEKWRRALNKSAAVAGIELSKYRDDAKLLKEIINVVLKNMSKHPVNSQVLVGIDRPIAHLKSLLKKESEKVRVIGIWGEDVKINTPKSLSDDIVRRVGQMKVLIVLDDVKNTNQLEMLFGTLDWFRPDSRIILTSRDKQVLIANEVDDEDIYEAGVLSSDEALELFNLKAFRQNNQLKMEEYYELSNSFVDYAGGIPLVLEILGCLLRGKEKEFWESQLDKLKREPIKEVYDVMRLSYDDLDRLEQNIFLDIACFFNGLNLKVDYMKLLLKDRENDNSVAVGLFAKNLGKTQEAAVDYGILMTFVMY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2119g00001 440 Gene3D - 289 375 IPR042197 -
Trme2119g00001 440 Pfam NB-ARC domain 216 371 IPR002182 GO:0043531
Trme2119g00001 440 Pfam TIR domain 9 179 IPR000157 GO:0007165
Trme2119g00001 440 PRINTS Disease resistance protein signature 326 340 - -
Trme2119g00001 440 PRINTS Disease resistance protein signature 229 243 - -
Trme2119g00001 440 ProSiteProfiles TIR domain profile. 8 173 IPR000157 GO:0007165
Trme2119g00001 440 SMART till_3 9 150 IPR000157 GO:0007165
Trme2119g00001 440 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 211 IPR044974 GO:0006952
Trme2119g00001 440 Gene3D - 7 179 IPR035897 -
Trme2119g00001 440 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Trme2119g00001 440 Gene3D - 212 282 IPR027417 -
Trme2119g00001 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 385 IPR027417 -
Trme2119g00001 440 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2119g00001 Trme-Chr2119 855 2767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2119g00001 9 390 WRKY Transcription Factor Family AT4G12020 27.107 3.22e-29 119