Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21183g00001 AGGGAGCTTGTTGTTTATTTGAATGCATTTTCTGGTGAAGCCACAACGGAATTTCCTAGCACCCTAGAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGACTTGGAAAGACTGTAATGACCATATCCCTTCTCATTGCCCATTCCGGAAGGGGTGGATCATTAGGCAGTCAACCCATAACTCAGTCATTTATTGAAGAGATTGAAACTCATGTGCACCCCGGGTCCCTGTCTCTATATGTTCATTACGGACAAAGTAGGCCCAAAGATGCAAAAAGTCTAGCTCAATGCGATGTTGTAATTACTACATACGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGAATAATGGTGGACTCTTCTCCATTCGTTGGTTCAGAGTGGTTCTTGACGAGGCACATACTATAAAATCTTCTAAAAGCCAAGTTTCTATGGCAGCTTCTGCTCTAATTGCTGACAATCGCTGGTGTCTTACTGGGACTCCAATCCAGACCGCTATGGGATGCATTAACTCGATATACCAGGAATCTTCAATTAATGCTAGGGTTATATTGTATGATTAA 573 0.4258 RELVVYLNAFSGEATTEFPSTLEMARGGILADAMGLGKTVMTISLLIAHSGRGGSLGSQPITQSFIEEIETHVHPGSLSLYVHYGQSRPKDAKSLAQCDVVITTYGILASEFSSENAENNGGLFSIRWFRVVLDEAHTIKSSKSQVSMAASALIADNRWCLTGTPIQTAMGCINSIYQESSINARVILYD 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21183g00001 190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 168 IPR027417 -
Trme21183g00001 190 SMART ultradead3 6 189 IPR014001 -
Trme21183g00001 190 CDD DEXDc_SHPRH-like 24 167 - -
Trme21183g00001 190 Gene3D - 18 177 IPR038718 -
Trme21183g00001 190 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 24 170 - -
Trme21183g00001 190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 19 183 IPR014001 -
Trme21183g00001 190 Pfam SNF2-related domain 5 168 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21183g00001 Trme-Chr21183 55 1217 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21183g00001 1 178 RAD5 or RAD16-like Gene Family AT5G22750 53.478 2.76e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme21183g00001 SNF2_N 4.6e-41 CL0023