Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme211604g00001 ACCATGGTGAGAGTGAGTGTATTGAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAAAGAGGAAAGCGTCAAGTCATGATTAGGCCATCCTCCAAAGTCATCATCAAGTTCCTTATTGTCATGCAGAAACACGGTTACATTGGTGAGTTTGAGTATGTTGATGATCACAGAGCTGGGAAAATCGTTGTTGAATTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATGTTGGTGT 251 0.4064 TMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme211604g00001 84 FunFam 40S ribosomal protein S15a 2 70 - -
Trme211604g00001 84 PANTHER 40S RIBOSOMAL PROTEIN S15A 2 84 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trme211604g00001 84 SUPERFAMILY Ribosomal protein S8 5 82 IPR035987 GO:0003735|GO:0005840|GO:0006412
Trme211604g00001 84 Pfam Ribosomal protein S8 8 77 IPR000630 GO:0003735|GO:0005840|GO:0006412
Trme211604g00001 84 Gene3D - 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme211604g00001 Trme-Chr211604 86 424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme211604g00001 2 84 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.590 2.47e-56 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme211604g00001 K02957 - thj:104810027 166.392