Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme211481g00001 GGTCACGTTGGTCTTGGTGTTAAGTGTAGCAAAGAAGTAGCAACTGCAATTCGTGGTGCTATTATCTTAGCTAAGCTTTCTGTTATTCCTGTTAGGAGAGGTTATTGGGGTAATAAGATTGGAAAGCCTCACACTGTTCCTTGTAAGGTTACTGGAAAGTGTGGTTCTGTTACTGTTCGTATGGTTCCTGCTCCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAGAAGGTCTTGCAATTTGCTGGTATTGATGATGTTTTTACTTCCTCTAGGGGTTCCACCAAAACCCTTGGAAATTTCGTCAAGGTTTGGATCTATCTTTTTATTGTTATTTTTATGCTAAGTAGTTGTTAG 360 0.4056 GHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKVWIYLFIVIFMLSSC 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme211481g00001 119 Gene3D - 1 30 - -
Trme211481g00001 119 Pfam Ribosomal protein S5, N-terminal domain 1 32 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trme211481g00001 119 SUPERFAMILY Ribosomal protein S5 domain 2-like 44 107 IPR020568 -
Trme211481g00001 119 Pfam Ribosomal protein S5, C-terminal domain 52 104 IPR005324 GO:0003735|GO:0005840|GO:0006412
Trme211481g00001 119 SUPERFAMILY dsRNA-binding domain-like 1 33 - -
Trme211481g00001 119 FunFam 40S ribosomal protein S2 31 114 - -
Trme211481g00001 119 Gene3D - 31 116 IPR014721 -
Trme211481g00001 119 ProSiteProfiles S5 double stranded RNA-binding domain profile. 1 31 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Trme211481g00001 119 PANTHER RIBOSOMAL S SUBUNIT 1 103 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme211481g00001 Trme-Chr211481 1 360 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme211481g00001 1 105 Cytoplasmic Ribosomal Protein Gene Family AT1G58983 98.095 3.15e-69 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme211481g00001 K02981 - gmx:100809096 211.46