Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21137g00001 ATGGGACGTGTGATTCGTGCCCAGCGTAAGGGTGCTGGTTCTGTATTCAAGTCTCACACCCACCACCGCAAAGGTCCCGCTCGTTTCCGTAGTCTCGACTTCGGTGAGCGTAATGGTTACCTTAAAGGAGTTGTAACCGACGTCATCCACGATCCAGGTCGTGGTGCTCCTCTTGCCAAAGTTACTTTCCGTCATCCATTTCGTTACAAGAAACAGAACGAACTTTTTGTTGCTGCTGAAGGTTTATACACCGGTCAATTCATTTACTGCGGTAAGAAAGCTACCCTTGTCGTCGGTAATGTTCTTCCTTTGAGATCTATTCCCGAAGGAGCTGTCATTTGTAACGTTGAAGGTCATGTTGGTGACCGTGGTGTTTTCGCTAGAGCTTCTGGTGATTACGCTATTGTTATCAGTCATAACCCTGATAACGATACCTCTAGGATCAAACTTCCTTCTGGTGCAAAGAAGATTGTGCCCAGTGACTGTAGGGCAATGATCGGGCAAGTTGCCGGTGGTGGTAGAACTGAGAAACCACTTTTGAAAGC 545 0.4734 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKKQNELFVAAEGLYTGQFIYCGKKATLVVGNVLPLRSIPEGAVICNVEGHVGDRGVFARASGDYAIVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKA 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21137g00001 182 FunFam 60S ribosomal protein L2 1 86 - -
Trme21137g00001 182 Gene3D - 90 169 IPR014722 -
Trme21137g00001 182 FunFam 60S ribosomal protein L8 90 169 - -
Trme21137g00001 182 Pfam Ribosomal Proteins L2, C-terminal domain 98 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme21137g00001 182 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme21137g00001 182 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Trme21137g00001 182 PANTHER RIBOSOMAL PROTEIN L2 2 182 IPR002171 GO:0003735|GO:0005840|GO:0006412
Trme21137g00001 182 SMART Ribosomal_L2_C_2 96 182 IPR022669 GO:0003735|GO:0005840|GO:0006412
Trme21137g00001 182 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Trme21137g00001 182 Gene3D - 1 86 IPR012340 -
Trme21137g00001 182 SUPERFAMILY Translation proteins SH3-like domain 99 182 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21137g00001 Trme-Chr21137 1 1304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21137g00001 1 182 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.308 5.06e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21137g00001 K02938 - gmx:547677 365.925