Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21101g00001 CGAGGTGCAAGATCACTTCTTCCGAGTTGTAATATTCGATATGAATCTTACCCGTTTTACAATGTTTCTGCTGTTTCCACTCAACCGCAACTTCAATCTCCTTCTTCAGGGAAAAACAATGTTTCTATAATTGTTGCGATTGTTGTCCCAATTGTTGTTGCTCTGGTGCTTTTCATTATCGGCTGTTACTTCCTGCCTGCCACAAATTGCTTCTCCGATGAGAACAAGATTGGCCAAGGTGGATTTGGCGTGGTTTATAAGGGTATCCTTCCTAACGGACAGGAGATAGCTGTGAAGAGGTTGTCAATGACCTCCTTGCAGGGTACAATAGAGTTCAGGAACGAAGCTTCCCTTGTGGCCAAGCTTCAACATAGAAATTTAGTGAGGATGTTTGGATTTTGTTTGGAAGGGAGGGAGAAGATACTTGTCTATGAATACATAACAAATAAAAGCCTTGATCACTTTCTATTTGGTATGGTGTTACCTTTTTTCTTATAG 498 0.4096 RGARSLLPSCNIRYESYPFYNVSAVSTQPQLQSPSSGKNNVSIIVAIVVPIVVALVLFIIGCYFLPATNCFSDENKIGQGGFGVVYKGILPNGQEIAVKRLSMTSLQGTIEFRNEASLVAKLQHRNLVRMFGFCLEGREKILVYEYITNKSLDHFLFGMVLPFFL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21101g00001 165 FunFam Cysteine-rich receptor-like protein kinase 10 53 146 - -
Trme21101g00001 165 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Trme21101g00001 165 Pfam Protein tyrosine and serine/threonine kinase 74 156 IPR001245 GO:0004672|GO:0006468
Trme21101g00001 165 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 157 - -
Trme21101g00001 165 ProSiteProfiles Protein kinase domain profile. 71 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme21101g00001 165 SUPERFAMILY Protein kinase-like (PK-like) 44 160 IPR011009 -
Trme21101g00001 165 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21101g00001 Trme-Chr21101 2 1137 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21101g00001 2 158 Receptor kinase-like Gene Family AT4G05200 43.415 1.05e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme21101g00001 PK_Tyr_Ser-Thr 8.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21101g00001 - - var:108324780 231.491