Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme210g00002 ATGTGGCCATGGAATTGCATCAAGAAGCCTGATGTTTTTGGAAACAATGACGGGTTATGGTTCACTAATTTTGAGAGGTACAGAATGGGGGGATTCTCTATGGCTGCTCGTCGAGCAAACATAGAGATGGAAGATTACAGCCAAGTTGAAGTTGGTGACAAAAGTATATTTGTCGGAATATACGACGGACGTGGTGGTAACGACGCAGCAAAGATCTTCTCAAATGTCCTACTTCAGAAACTATTACGGCGGATTCATGAAAACGGTGACGTGATCTCGTTTGATCTTCTTATTGAAGCCATCACTGCAACAAAAAAACTGTTCGTTAGGCAACAAGATTCTTCTTGTCTAATCAGCCTTGTGTGGAAAGATACTCTCTACATAGCCAACCTTGGTGATTCGAGACTTGTGATTGGCACCGAAGTCGGTGATACATCGGTGTTAAAAGTTGAACAACTGACCAGCGATCAAAGTTCAAAACTAATGGTACATAAAAGAAACATCAGAGATGATGATAGGTGTCTTATCCTTGCATCCATTGGATTTTGGAAGATTATGAAGAATGAAGAGGCAATGTTAATTGTTGAGAGACATTCCAAACATCGGGCACAAAAACGCCATTGTGCCGCTACTAAACGGCTTTTCATAGCCGCTATGACTGCTTCTCTCAACGGCGCTTCGCGGCCCTATGACGTAGCCGTGGAGGGCCTCGCTGCTAATAGCGCCACTATTAACAACATATATTTTGTTAGACTATTCAAATTTTAG 768 0.4232 MWPWNCIKKPDVFGNNDGLWFTNFERYRMGGFSMAARRANIEMEDYSQVEVGDKSIFVGIYDGRGGNDAAKIFSNVLLQKLLRRIHENGDVISFDLLIEAITATKKLFVRQQDSSCLISLVWKDTLYIANLGDSRLVIGTEVGDTSVLKVEQLTSDQSSKLMVHKRNIRDDDRCLILASIGFWKIMKNEEAMLIVERHSKHRAQKRHCAATKRLFIAAMTASLNGASRPYDVAVEGLAANSATINNIYFVRLFKF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme210g00002 255 ProSiteProfiles PPM-type phosphatase domain profile. 28 255 IPR001932 -
Trme210g00002 255 CDD PP2Cc 29 200 IPR001932 -
Trme210g00002 255 SUPERFAMILY PP2C-like 25 202 IPR036457 -
Trme210g00002 255 PANTHER PROTEIN PHOSPHATASE 29 158 IPR015655 GO:0004722|GO:0006470
Trme210g00002 255 Gene3D - 160 229 IPR036457 -
Trme210g00002 255 Pfam Protein phosphatase 2C 163 221 IPR001932 -
Trme210g00002 255 Pfam Protein phosphatase 2C 36 157 IPR001932 -
Trme210g00002 255 SMART PP2C_4 18 247 IPR001932 -
Trme210g00002 255 Gene3D - 20 159 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme210g00002 Trme-Chr210 3709 4864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme210g00002 19 185 PP2C-type Phosphatase Gene Family AT5G06750 36.559 3.37e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme210g00002 K01102 - tcc:18593516 132.494