Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2108g00001 GGGCTTGGTAAAACATTGCAAACTATATCTTTAATGGGTTACTTGCACGAGTTTAGAGGAATTAAAGGCCCTCATATGGTGGTTGCCCCAAAATCAACTCTTGGGAATTGGATGAATGAGATTCGTCGCTTTTGTCCTATTTTGCGTGCTGTAAAATTCCTCGGCAACCCTGAAGAAAGGAGACATATAAGAGAGGAATTGTTGGTTGCTGGGAAGTTTGATGTTTGTGTTACAAGTTTTGAAATGGCTATCAAGGAGAAGACTACTTTACGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAACGAGAATTCATTGCTCTCTAAAACAATGAGGATCTACAATACAAACTACCGCCTCCTTATCACCGGCACGCCACTTCAGAATAATCTTCATGAACTGTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGACCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCAAAAAAAGAAACCATTCTTAAAGTGGGCATGTCACAATTGCAGAAACAATATTATAAAGCATTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGCGGAGAACGGAAGCGTCTCCTGAATATAGCTATGCAACTACGGAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACCAATGCTGGTAAAATGGTTCTTTTGGATAAGTTGCTTCCTAAATTAAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTCCGTGGATATCAATATTGTCGCATAGATGGCAATACTGGTGGGGATGATCGTGACGCTTCCATTGATGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGGGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCCCAGGACCGTGCTCATAGGATAGGTCAGAAGAAAGAAGTTCAAGTTTTCCGTTTTTGCACTGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAACTTGCACTTGATGCTTTGGTGATTCAACAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTCAGTTCCAAAGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCCAAAGGAGAAGAAGCAACTGCGGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGTTTATTAG 1497 0.4021 GLGKTLQTISLMGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRHIREELLVAGKFDVCVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQLQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTVY 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2108g00001 498 SMART ultradead3 1 161 IPR014001 -
Trme2108g00001 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 429 IPR001650 -
Trme2108g00001 498 CDD SF2_C_SNF 274 399 - -
Trme2108g00001 498 FunFam ISWI chromatin-remodeling complex ATPase CHR11 194 486 - -
Trme2108g00001 498 Pfam Helicase conserved C-terminal domain 276 388 IPR001650 -
Trme2108g00001 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 150 IPR014001 -
Trme2108g00001 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 188 IPR027417 -
Trme2108g00001 498 Gene3D - 1 189 IPR038718 -
Trme2108g00001 498 FunFam Photoperiod-independent early flowering 1 1 211 - -
Trme2108g00001 498 Gene3D - 194 486 IPR027417 -
Trme2108g00001 498 Pfam SNF2-related domain 1 253 IPR000330 GO:0005524|GO:0140658
Trme2108g00001 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 471 IPR027417 -
Trme2108g00001 498 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 478 - -
Trme2108g00001 498 SMART helicmild6 304 388 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2108g00001 Trme-Chr2108 117 2531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2108g00001 1 415 RAD5 or RAD16-like Gene Family AT1G02670 26.104 3.39e-38 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trme2108g00001 SNF2_N 3.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2108g00001 K11654 - csav:115723339 970.689