Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21081g00001 ATGGTGAACAAGAGAAATGTAAGAGAATGTGAAGGAGTGGAAAAGACCAGTGAAGAAAGGAACACAGAATGGAAACAGATAAGGGAAGAGGCGGCATCAGTAGCAGCTGCTCTACTTAGAGTTCGAAGAGCAAGAAAACGTTACATTGGTGTGAGACAGAGACCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGACTATGGTTGGGGACTTATGACACCGGCGAAGAGGCTGCTAGAGCTTATGATGAAGCTGCACGTTTGCTTCGTGGTGCAAACACCCGCACAAATTTCTTTCTTTGCCAATCTTCTCATTATGTTCCTTCTCTTCCTCCAAAGATTGCCAAAACCTTGCTTCTAAGGCTCAAAGCAAGAAACATTGCCTCTTCTTGTATTCCCACTAGTACTAGTACTACTACTTTTCCTACTAACCACTATGATGATCAAGAAAACAAAGCACAACCTGAACCCCATTTTTTACACCAAATAGAAGAAAACTATGTAGAAATTTATGATGGTGCTAGTTATGGTTCTTCTGACTTAACTAATATTGACTGTGGTAGTGGGACTAGTGAAGAAAATGTTAACCAAGAGGGTAGCAGAGAGGATTTTAGATTGGGACATCGTTGTGCTAACAGTGTTGATGATGGTGGAAACCACCAGATTGCAGAGTGTAATGGTGAATTTGAAAACTGTGATGTTGGAGTCATTGACTTCCAATTTCTGGATACTGTTGGATCATTAAGTCACTTTTACTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGGTAGGGCCAATGGCAGACGAGAAATATGACGTGGATGATTCACTGTTACTTAGAGAAACATTTAGAATGAAGTATGAACGCAAATTCTCAGCTTGTCTTTACACCTTGATTGGGGTGTCCGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAATGATTTCTAA 972 0.4095 MVNKRNVRECEGVEKTSEERNTEWKQIREEAASVAAALLRVRRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGANTRTNFFLCQSSHYVPSLPPKIAKTLLLRLKARNIASSCIPTSTSTTTFPTNHYDDQENKAQPEPHFLHQIEENYVEIYDGASYGSSDLTNIDCGSGTSEENVNQEGSREDFRLGHRCANSVDDGGNHQIAECNGEFENCDVGVIDFQFLDTVGSLSHFYSSSPFEIAEEMVGPMADEKYDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGPENGNDF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21081g00001 323 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 23 206 - -
Trme21081g00001 323 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 MobiDBLite consensus disorder prediction 1 20 - -
Trme21081g00001 323 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Trme21081g00001 323 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Trme21081g00001 323 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Trme21081g00001 323 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21081g00001 Trme-Chr21081 348 1319 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21081g00001 45 103 AP2-EREBP Transcription Factor Family AT5G19790 76.271 5.33e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme21081g00001 AP2 6.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21081g00001 K09286 - gmx:100793940 350.903