Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21079g00001 AGAAGCCAGACGACGATAGCTCGATCTCGTTCTGAGCCTGTAGATACTCAAGAAAAAACCATAAGGAAAATGGATACGTTTTTCCGCATTATTCCTTCCACCCCAGGTGTAAAGGAAGCGAAAGAATGGTTAAAAGCATCATCAGAAAAGGATACTGAAAATGACGGTGACGACGGTGATGGTGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGCGAAGGAGGTGAGACATTGAAGATGGAATGCTGTTGCAAAGGTGAACTTGCGTTGGCTCACCAAGAATGTGCTATTAAGTGGTTTAGTATCAGAGGTAACAAGACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCCCTGTCACTCTTTTAAGGATCCAAAATGTTCAAACTCAGAATACTGGTGCAAGGTCTCAGCAGGACGATGACTTCAGGCATGTGCAGTTTTTAATGTTTGATAAAAATTATAACTGCTATATTTTGATTGAATTATAG 516 0.4089 RSQTTIARSRSEPVDTQEKTIRKMDTFFRIIPSTPGVKEAKEWLKASSEKDTENDGDDGDGGEDIAEEEAVCRICLIELCEGGETLKMECCCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQNTGARSQQDDDFRHVQFLMFDKNYNCYILIEL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21079g00001 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 128 IPR013083 -
Trme21079g00001 171 CDD RING_CH-C4HC3_MARCH 72 120 - -
Trme21079g00001 171 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Trme21079g00001 171 SMART ringv_2 71 120 IPR011016 GO:0008270
Trme21079g00001 171 PANTHER OS02G0165000 PROTEIN 3 148 - -
Trme21079g00001 171 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Trme21079g00001 171 SUPERFAMILY RING/U-box 68 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21079g00001 Trme-Chr21079 225 952 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21079g00001 66 126 C3H Transcription Factor Family AT2G37950 41.935 3.75e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21079g00001 - - cam:101488558 270.396