Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme210526g00001 ATGGAAGTATCATCCGGAGCAGATGTAGCCGAAAGCGTAGCTCAGTTTGCAAGAAGGCGACAGCGCGGTGTTTGTGTCTTAAGTGGTAGCGGATCAGTAGCAAATGTTACCCTTAGACAACCAGCAGCACCAGGAGCTGTTGTAGCACTACATGGAAGATTCGAGATTTTATCGTTAACCGGAGCTTTTCTACCCGGTCCTGCTCCTCCAGGCGCTACAGGACTCACAGTGTACCTTGCTGGTGGACAAGGTCAAGTTGTTGGAGGAAGTGTTGTTGGATCTTTAATTG 289 0.4913 MEVSSGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFEILSLTGAFLPGPAPPGATGLTVYLAGGQGQVVGGSVVGSLI 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme210526g00001 96 Gene3D - 1 96 - -
Trme210526g00001 96 CDD DUF296 2 80 IPR005175 -
Trme210526g00001 96 SUPERFAMILY AF0104/ALDC/Ptd012-like 2 95 - -
Trme210526g00001 96 Pfam Plants and Prokaryotes Conserved (PCC) domain 1 95 IPR005175 -
Trme210526g00001 96 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 96 IPR014476 GO:0003680
Trme210526g00001 96 ProSiteProfiles PPC domain profile profile. 1 96 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme210526g00001 Trme-Chr210526 1 289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme210526g00001 1 80 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 80.000 1.27e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme210526g00001 - - tpra:123902734 138.272