Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21010g00001 ATGATTTTTCGGAATTTCTCAATCTTTTTTCCTGCCGGCAAAACTGTTGCGGTTGTTGGTGGTAGTGGTTCTGGAAAAAGTACCGTTGTTTCCTTGATCGAAAGGTTCTATGATCCTAATGACGGTCAGGTTCTGCTCGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGCGATCAAATTGGTTTGGTGAATCAAGAGCCTGCACTATTTGCAACTACAATTCGTGAGAACATACTGTATGGAAAACCTGATGCAACAAATGATGAAATCGAAGCCGCAACTTCTGCTGCAAATGCTCATAGCTTTATTACATTGCTTCCGAATGGCTACAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCCGGGGGACAAAAACAAAGAATTGCAATTGCGAGAGCTATGTTGAAAAATCCAAAGATCCTTCTCTTAGACGAAGCGACTAGTGCTCTCGATGCAGGATCCGAAAGCATCGTTCAAGAAGCGCTAGACCGTCTCATGGTTGGTAGAACTACCGTGGTTGTCGCTCATCGTTTATCAACAATTAGAAATGTCGACTCTATTGCAGTTATTCAACAAGGGGTAGTTGTCGAGACAGGAACACATGAAGAACTTTTCGCCAAGGGAGGTACCTACGCTTCTCTAATTCGATTCCAAGAAATGGTTGGAAACAGAGACTTCTCGAACCCTTCAACTCGCAGGAATCGTTCGTCACGGTTGAGTCATTCACTTTCAACAAAGTCTTTAAGCCTAAGGTCAGGAAGCTTGAGGAACTTGAGCTACCARTATAGCACCGGAGCCGACGGTCGCATTGAGATGATCTCAAATGCCGAAACCGATAAGAAAAATCCTGCTCCGGATGGATATTTCTTCCGATTACTCAAGATGAATGCGCCCGAATGGCCTTACTCGATAATGGGAGCCGTTGGATCTATTCTTTCTGGATTCATTGGTCCAACTTTTGCTATTGTTATGAGCAATATG 993 0.433 MIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNDGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIRENILYGKPDATNDEIEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGVVVETGTHEELFAKGGTYASLIRFQEMVGNRDFSNPSTRRNRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSILSGFIGPTFAIVMSNM 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21010g00001 331 CDD ABC_MTABC3_MDL1_MDL2 2 222 - -
Trme21010g00001 331 FunFam ABC transporter B family member 19 1 223 - -
Trme21010g00001 331 Gene3D - 1 232 IPR027417 -
Trme21010g00001 331 Gene3D ABC transporter type 1, transmembrane domain 254 331 IPR036640 GO:0005524|GO:0016020
Trme21010g00001 331 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 3 221 IPR003439 GO:0005524
Trme21010g00001 331 PANTHER ABC TRANSPORTER B FAMILY 2 320 IPR039421 -
Trme21010g00001 331 SMART AAA_5 12 204 IPR003593 GO:0016887
Trme21010g00001 331 MobiDBLite consensus disorder prediction 229 248 - -
Trme21010g00001 331 ProSitePatterns ABC transporters family signature. 124 138 IPR017871 GO:0005524|GO:0016887
Trme21010g00001 331 Pfam ABC transporter 4 152 IPR003439 GO:0005524
Trme21010g00001 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 222 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21010g00001 Trme-Chr21010 1 1202 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21010g00001 2 329 Calmodulin-binding Proteins AT2G36910 59.130 1.05e-123 382