Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme21004g00001 ATGGAAATCATCAAGCAGAAACCAACCATAGTCGAAGATCTGTTAGACGGAAAGTGCTTAGCCGAGGTTAATGGCAACATTGAATTTAAAGATGTTAGTTTCAGCTATCCGTCAAGACCGGATGTGATGATTTTTCGGAATTTCTCAATCTTTTTTCCTGCCGGCAAAACTGTTGCGGTTGTTGGTGGTAGTGGTTCTGGAAAAAGTACCGTTGTTTCCTTGATCGAAAGGTTCTATGATCCTAATGACGGTCAGGTTCTGCTCGATAATGTGGACATTAAGACACTACAACTAAAATGGTTACGCGATCAAATTGGTTTGGTGAATCAAGAGCCTGCACTATTTGCAACTACAATTCGTGAGAACATACTGTATGGAAAACCTGATGCAACAAATGATGAAATCGAAGCCGCAACTTCTGCTGCAAATGCTCATAGCTTTATTACATTGCTTCCGAATGGCTACAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCCGGGGGACAAAAACAAAGGATTGCAATTGCGAGAGCTATGTTGAAAAATCCAAAGATCCTTCTCTTAGATGAAGCGACTAGTGCTCTCGATGCAGGATCCGAAAGCATCGTTCAAGAAGCTCTAGACCGTCTCATGATTGGTAGAACTACCGTGGTCGTCGCTCATCGCTTATCAACAATTAGAAATGTCGACTCTATTGCAGTTATTCAACAAGGGGTAGTTGTCGAAACCGGAACACATGAAGAACTTTTTGCCAAGGGAGGTACCTACGCTTCTCTAATTCGATTCCAAGAAATGGTTGGAAATAGAGACTTCTCGAACCCTTCAACTCGCAGGAATCGTTCGTCACGGTTGAGTCATTCACTTTCAACAAAGTCTTTAAGCCTAAGGTCAGGAAGCTTGAGGAACTTGAGCTACCAATACAGCACCGGAGCCGACGGTCGCATTGAGATGATCTCAAATGCCGAAACCGATAAGAAAAATCCGGCTCCGGATGGATATTTCTTCCGATTACTCAAGATGAATGCGCCCGAGTGGCCTTACTCGATAATGGGTGCCGTTGGATCTATTCTTTCTGGATTCATTGGTCCAACTTTTGCTATTGTTATGAGCAATATG 1119 0.4316 MEIIKQKPTIVEDLLDGKCLAEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNDGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIRENILYGKPDATNDEIEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVVVAHRLSTIRNVDSIAVIQQGVVVETGTHEELFAKGGTYASLIRFQEMVGNRDFSNPSTRRNRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKMNAPEWPYSIMGAVGSILSGFIGPTFAIVMSNM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme21004g00001 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 264 IPR027417 -
Trme21004g00001 373 SMART AAA_5 54 246 IPR003593 GO:0016887
Trme21004g00001 373 Pfam ABC transporter 46 194 IPR003439 GO:0005524
Trme21004g00001 373 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Trme21004g00001 373 Gene3D ABC transporter type 1, transmembrane domain 2 373 IPR036640 GO:0005524|GO:0016020
Trme21004g00001 373 FunFam ABC transporter B family member 19 17 265 - -
Trme21004g00001 373 Gene3D - 25 288 IPR027417 -
Trme21004g00001 373 CDD ABC_MTABC3_MDL1_MDL2 27 264 - -
Trme21004g00001 373 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 263 IPR003439 GO:0005524
Trme21004g00001 373 MobiDBLite consensus disorder prediction 271 290 - -
Trme21004g00001 373 PANTHER ABC TRANSPORTER B FAMILY 2 362 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme21004g00001 Trme-Chr21004 13 1340 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme21004g00001 3 371 Calmodulin-binding Proteins AT2G36910 58.808 8.75e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme21004g00001 K05658 - gmx:100797124 626.706