Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20992g00001 ATGAAGAACGGGGAGGATCCTCTTGAATCAGAATCACATAGTATTCACCTTGATCACAAGGAGTTTGAATTCAGCGAGATTTTCGTGCACCAACTTATACACACAATTGAATTTGTGCTTGGAGCCGTGTCTAATACAGCTTCGTATCTTCGTTTATGGGCTCTCAGTCTAGCTCATTCGGAGTTATCAAGCGTTTTCTATGACAAAGTTCTGCTTCTCGCTTGGGGGTATAACAACACCATTGTTCTCATTGTTGGAATTATTGTTTTTATATGTGCAACTGTTGGTGTCTTACTAGTAATGGAAAGCCTAAGTGCTTTCTTACATGCTTTGAGACTTCACTGGGTAGAGTTTCAAAATAAATTTTATGAGGGAGATGGTTATAAGTTCACCCCATTTTCATTTACATCGCTTACCGACGAGGATGGAATATAG 435 0.3931 MKNGEDPLESESHSIHLDHKEFEFSEIFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNTIVLIVGIIVFICATVGVLLVMESLSAFLHALRLHWVEFQNKFYEGDGYKFTPFSFTSLTDEDGI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20992g00001 144 PANTHER VACUOLAR PROTON ATPASES 12 141 IPR002490 GO:0033179|GO:0046961|GO:1902600
Trme20992g00001 144 Pfam V-type ATPase 116kDa subunit family 10 135 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20992g00001 Trme-Chr20992 531 1264 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20992g00001 7 142 Primary Pumps ATPases(2) AT4G39080 77.778 1.42e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20992g00001 K02154 - gmx:100805813 248.825