Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20991g00001 ATGGCTGTTGGAAAGAACAAACGCATCTCAAAGGGGAAGAAAGGTGGAAAGAAGAAAGCAGCTGATCCCTTTGCCAAGAAGGATTGGTATGACATYAAAGCTCCTTCAGTTTTCCAAGTGAAAAATGTTGGCAAAACCCTCGTATCTCGTACTCAGGGTACCAAGATTGCTTCAGATGGACTCAAACATAGAGTGTTTGAGGTTTCATTGGCTGATCTTCAAGGGGATGAGGAACATGCTTTCAGGAAGATTAGGTTGAGAGCTGAAGATGTTCAAGGGAAGAATCTTTTGACAAATTTCTGGGGGATGAATTTCACAACCGACAAACTGAGGTCATTGGTTCGTGAAGAGGACCTGTTATGCACAATCGAGCCAGATTAA 381 0.4278 MAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASDGLKHRVFEVSLADLQGDEEHAFRKIRLRAEDVQGKNLLTNFWGMNFTTDKLRSLVREEDLLCTIEPD 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20991g00001 126 SMART Ribosomal_S3Ae_2 15 125 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trme20991g00001 126 MobiDBLite consensus disorder prediction 1 21 - -
Trme20991g00001 126 Pfam Ribosomal S3Ae family 16 116 IPR001593 GO:0003735|GO:0005840|GO:0006412
Trme20991g00001 126 PANTHER 40S RIBOSOMAL PROTEIN S3A 1 116 - -
Trme20991g00001 126 ProSitePatterns Ribosomal protein S3Ae signature. 61 73 IPR018281 GO:0003735|GO:0005840|GO:0006412
Trme20991g00001 126 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20991g00001 Trme-Chr20991 17 1239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20991g00001 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G04840 83.621 2.08e-62 189