Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme209907g00001 ATGGAGCCGGGGCAGATGGCTCTACCACCGGAAGAGTTAAGGTGTCCAATATCTCTACAACTTATGTATGATCCTGTCATCATTGCTTCTGGGCAAACATATGAAAAGGTTTGCATAGAGAAATGGTTCGGTGATGGACACAGCAACTGCCCAAAGACCCAACAAAACCTTCCACATCTTTGCTTGACTCCTAATTACTGTGTTAAAGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAATTCCTATTCCTGAAGGCCCTCCTGAATCACTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAGTCTACAAATTCAAGATCTGTAAATAGTGTAAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGA 386 0.4197 MEPGQMALPPEELRCPISLQLMYDPVIIASGQTYEKVCIEKWFGDGHSNCPKTQQNLPHLCLTPNYCVKGLVASWCEQNGIPIPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPLE 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme209907g00001 128 PANTHER U BOX DOMAIN-CONTAINING 9 88 - -
Trme209907g00001 128 CDD RING-Ubox_PUB 10 62 IPR045210 -
Trme209907g00001 128 FunFam RING-type E3 ubiquitin transferase 8 82 - -
Trme209907g00001 128 ProSiteProfiles U-box domain profile. 8 82 IPR003613 GO:0004842|GO:0016567
Trme209907g00001 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 82 IPR013083 -
Trme209907g00001 128 Pfam U-box domain 10 79 IPR003613 GO:0004842|GO:0016567
Trme209907g00001 128 SUPERFAMILY RING/U-box 9 84 - -
Trme209907g00001 128 SMART Ubox_2 12 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme209907g00001 Trme-Chr209907 42 427 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme209907g00001 4 128 U-box Gene Family AT1G24330 80.000 1.08e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme209907g00001 - - vvo:131605531 251.136