Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme209719g00001 AAGCGCGGTGGGATCAGATTCACAATTAACGGATTCCGTTACTTTAACTTAGTACTAATCAGCAACGTCGCGGGTGCAGGTGATATCGTGCGCACCTACGTTAAAGGCTCAAGAACTGGGTGGATGCCAATGAGCAGAAACTGGGGGCAAAATTGGCAATCAAATTCTGTTTTAGTGGGCCAGTCTTTGTCCTTCAGAGTTACCGGTAGTGACCGTCGCACTTCCACTTCTTGGAACATTGCCCCACAAAATTGGCAATTTGGTCAAACTTTTACCGGAAAGAATTTTCGTGTTTGA 297 0.4579 KRGGIRFTINGFRYFNLVLISNVAGAGDIVRTYVKGSRTGWMPMSRNWGQNWQSNSVLVGQSLSFRVTGSDRRTSTSWNIAPQNWQFGQTFTGKNFRV 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme209719g00001 98 Pfam Expansin C-terminal domain 5 82 IPR007117 -
Trme209719g00001 98 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 14 93 IPR007117 -
Trme209719g00001 98 PRINTS Expansin/Lol pI family signature 79 93 IPR007118 GO:0005576
Trme209719g00001 98 PRINTS Expansin/Lol pI family signature 41 55 IPR007118 GO:0005576
Trme209719g00001 98 PRINTS Expansin signature 15 36 IPR002963 GO:0009664
Trme209719g00001 98 PRINTS Expansin signature 50 71 IPR002963 GO:0009664
Trme209719g00001 98 PRINTS Expansin signature 3 15 IPR002963 GO:0009664
Trme209719g00001 98 PRINTS Expansin signature 79 95 IPR002963 GO:0009664
Trme209719g00001 98 SUPERFAMILY PHL pollen allergen 1 93 IPR036749 -
Trme209719g00001 98 PANTHER EXPANSIN-A15 1 96 IPR002963 GO:0009664
Trme209719g00001 98 FunFam Expansin 4 96 - -
Trme209719g00001 98 Gene3D - 4 96 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme209719g00001 Trme-Chr209719 60 356 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme209719g00001 1 98 Expansin Gene Family AT2G39700 87.755 1.72e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme209719g00001 - - gmx:100811296 200.29