Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20964g00001 ATGAAAACTGTTTTCTTTAATAAAGGATTTGAGAATACTTATAAAGAGAAACTGAGGGTGGCAGTTTTGGTTTCCAAAGCAGCATTTCAATTTATCCAAGGCGTGAAACCTAGTGATTACAAAGTGCCGGAGGAAGTTAAAGATGCAGGATTTGAAATCTGTGGTGACGAGTTGGGGTCTATTGTTGAAGGTCATGATGTAAAGAAGTTGAAGTATCATGGTAGGGTTAATGGCATTGCTGAAAAGCTTTCTACATCAACCACTGAGGGGATTAGCAATGATACTGATTTACTGAATAAGAGACAACAGATATATGGAATCAATAAGTTCATTGAAAGTCAAGCTAAAAGCTTCTGGGTTTTTGTTTGGGAAGCCCTTCAAGACATGACTCTCATGATACTTGGAGTTTGTGCTCTTGTGTCTTTGATAGTTGGCATTGCAACAGAAGGATGGCCTAAGGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCTTATTGGTTGTCTTTGTGACAGCAACAAGTGATTATCGCCAATCGTTACAGTTCAAGGATTTGGACAAGGAGAAGAAGAAAATTTCCATTCAGGTCACAAGAAATGGATATAGGCAGAAAATGTCTATATATGAGTTACTTCCTGGTGATATCGTGCATCTTGCCATCGGTGACCAAGTTCCTGCTGACGGACTATTTCTTTCGGGATTTTCTCTGTTGATTGACGAGTCAAGTTTAACAGGAGAGAGTGAGCCTGTGGTGGTGAACACTGAAAATCCATTTCTTCTTTCCGGAACCAAGGTCCAAGATGGATCATGCAAGATGTTGATTACCACAGTTGGAATGAGGACTCAATGGGGTAAGTTGATGGCTACTCTCAGTGAAGGTGGTGATGATGAAACCCCATTACAGGTGAAACTTAATGGAGTGGCAACTATTATTGGGAAGATAGGCCTGTTCTTCGCCGTTATTACTTTTGCTGTTCTGATGAATGGACTTGTGAGCCTTAAACTCCAACAAGAAAGCTTCTGGAGCTGGAACGGCGATGATGCTTTG 1050 0.4095 MKTVFFNKGFENTYKEKLRVAVLVSKAAFQFIQGVKPSDYKVPEEVKDAGFEICGDELGSIVEGHDVKKLKYHGRVNGIAEKLSTSTTEGISNDTDLLNKRQQIYGINKFIESQAKSFWVFVWEALQDMTLMILGVCALVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKMSIYELLPGDIVHLAIGDQVPADGLFLSGFSLLIDESSLTGESEPVVVNTENPFLLSGTKVQDGSCKMLITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVITFAVLMNGLVSLKLQQESFWSWNGDDAL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20964g00001 350 Pfam Cation transporter/ATPase, N-terminus 73 141 IPR004014 -
Trme20964g00001 350 SUPERFAMILY Calcium ATPase, transmembrane domain M 73 328 IPR023298 -
Trme20964g00001 350 Pfam E1-E2 ATPase 193 329 - -
Trme20964g00001 350 Gene3D - 124 331 - -
Trme20964g00001 350 FunFam Calcium-transporting ATPase 172 292 - -
Trme20964g00001 350 Gene3D - 98 292 - -
Trme20964g00001 350 SUPERFAMILY Calcium ATPase, transduction domain A 195 289 IPR008250 -
Trme20964g00001 350 PANTHER CATION TRANSPORTING ATPASE 50 331 - -
Trme20964g00001 350 NCBIfam HAD-IC family P-type ATPase 161 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20964g00001 Trme-Chr20964 1 1221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20964g00001 9 350 Primary Pumps ATPases AT4G37640 79.240 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20964g00001 K01537 - gmx:100792691 598.586