Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20963g00001 ATGCCTTCAGTTCTCTCACTCACACCTTTCTCACTCACGCCTCTCTCAGCCTCAGCTCTCTCACTCCCGATCTCGATCTCNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATCCACTCTGCTAATCCTCTCGCCGCACGTCACGAGCGTCTTCCGGTTACTCCTATCTTCGAATCCAACACTGTTAAATCTTTTCACAATAATAACAATAACAACTACGATGCTGTTAAAGATGAAGCCGAAGCTGCTTCGTGGCTGATCTCTGATCCAAAAGCAGATCTCAACTCTTCTCCTTATATGTTATCCGATTCCGAAGCTATTCCGTTTATGGATCTCGATTACGGTGCTATCGAACATAAAAACGACGGTGTTGTTCCTGTTCACGGTAACTTCGATCGTTTCACTTCTGCTTACAAGAACAACACACATACAGAGTTAGAAACACCGTCACCGTCGCAGATTAGTAACAGTGTTTCATCGTCAATGGAGGTTGGAGTTGTTCCGGATGGAAACGCCGTATCGGAGATATCAAACTGTGGATACGTTAAAGCGGTGGCGGCGGATCGTGAAGCTAGGGTGTTGAGGTATAAGGAGAAGAGGAAGAATCGAAGGTTCGAGAAAACGATTCGTTACGCTTCTCGTAAAGCTTATGCAGAAACTAGGCCTAGGATTAAAGGAAGGTTTGCTAAACGTAGCGATGCCGTTGATTCTATTTCTGGATACGGCGTCGTTCCGACGTGTTGA 744 0.4395 MPSVLSLTPFSLTPLSASALSLPISISXXXXXXXXXXIHSANPLAARHERLPVTPIFESNTVKSFHNNNNNNYDAVKDEAEAASWLISDPKADLNSSPYMLSDSEAIPFMDLDYGAIEHKNDGVVPVHGNFDRFTSAYKNNTHTELETPSPSQISNSVSSSMEVGVVPDGNAVSEISNCGYVKAVAADREARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDAVDSISGYGVVPTC 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20963g00001 247 Pfam CCT motif 189 231 IPR010402 GO:0005515
Trme20963g00001 247 ProSiteProfiles CCT domain profile. 189 231 IPR010402 GO:0005515
Trme20963g00001 247 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 37 238 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20963g00001 Trme-Chr20963 220 1051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20963g00001 38 246 C2C2-CO-like Transcription Factor Family AT5G24930 36.806 2.59e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trme20963g00001 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20963g00001 - - gmx:100804201 248.825