Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20888g00001 ATGATTGTTCTCCTAATAGCCAAAACTGTAGGAGATTGCTTCAACCCTAGCATCTATGAGATTATACTGCATTTGAAAGGCCTTCCTTTCATGGACGCAAATCCTGAGTCATGGATGAGAAACCTCACTGTTGGCGAGCTTGTAGATGTAAAGCCGGCAGTGATTTCCCTACAAGGAGTAGAAAAGGTAGCCAAGATAGTAGATGTCTTGAAAAACACTACTCATAATGGTTTCCCGGTGATGGACGATGGGATAGTACCGCCAGTAGGACAGGCCAACGGGGCAACAGAACTGCATGGACTAATTCTAAGAGCACACCTTATCCAAGCATTAAAGAAGAAGTTCTTCTTGAACGAGAGAAGAAGAACAGAGGAATGGGAAGTGAGAGAGAAATTTACCTGGGTAGAACTGGCCGAGAGAGAAGGGAATATTGAAGAGGTGGCTATAACGAGGGAAGAAATGGAGATGTTTGTTGATCTACATCCTCTCACAAATACAACTCCATTTACTGTGCTAGAGAGCATATCAGTAGCAAAAGCAATGATCCTCTTCAGGCAAGTTGGACTTCGTCATTTGCTTGTAGTTCCGAAATATCAAGCATCAGGGGTATGCCCTGTAATTGGGATTTTAACCAGACAGGATCTATTGGCCCACAACATTCTGACAGTCTTTCCTCACCTGGCAAAATCTAAGAGCAGACAGAAGAGAAATTGA 714 0.4328 MIVLLIAKTVGDCFNPSIYEIILHLKGLPFMDANPESWMRNLTVGELVDVKPAVISLQGVEKVAKIVDVLKNTTHNGFPVMDDGIVPPVGQANGATELHGLILRAHLIQALKKKFFLNERRRTEEWEVREKFTWVELAEREGNIEEVAITREEMEMFVDLHPLTNTTPFTVLESISVAKAMILFRQVGLRHLLVVPKYQASGVCPVIGILTRQDLLAHNILTVFPHLAKSKSRQKRN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20888g00001 237 SMART cbs_1 167 220 IPR000644 -
Trme20888g00001 237 SMART cbs_1 53 112 IPR000644 -
Trme20888g00001 237 ProSiteProfiles CBS domain profile. 164 230 IPR000644 -
Trme20888g00001 237 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 222 - -
Trme20888g00001 237 Gene3D Clc chloride channel 1 32 - -
Trme20888g00001 237 CDD CBS_pair_voltage-gated_CLC_euk_bac 51 218 - -
Trme20888g00001 237 SUPERFAMILY CBS-domain pair 35 217 IPR046342 -
Trme20888g00001 237 Gene3D - 33 223 IPR046342 -
Trme20888g00001 237 Pfam CBS domain 166 216 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20888g00001 Trme-Chr20888 468 1318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20888g00001 1 234 Ion Channels AT3G27170 76.496 2.74e-127 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20888g00001 K05016 - gmx:100788620 427.557