Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20883g00001 CAGGTTACATGGGACGAGCCAGATTTACTACAAAACGTGAAGCGCGTTAGTCCGTGGTTGGTCGAATTAGTTTCAAACGTACCAGTCATTCATTTCTCACCGTTTACTCCACCGAGGAAGAAGCTGCGGTTTCCACAAAACCTAGACTTCCCCCTCGANGTTCAATTTCCGTCACCGACGTTTTCAGGCAACCATCTCGGGCTAAACGGCCCTTTGTTTGGTTTATCTGATAATGCTCCTGCATGTATACAGGGAGCCAGGCATGCTCAATTTGGAGGAATATCTCTTTCAGATCTCAACCTTAACAACAATAAACTTCAGTTAGGGTTGTTTCCTACTAATATCCAGCACCTTGATGTGCGTAATAGGATTTCAAATGGTAACAACATGATGACCGAGAACGATAAGAATAAAGAAAGCTTATCATGCTTGTTGACCATAGGGAAAAAATCTGATAAGAGTTTGGAGAAATCTNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNATTTAGTAGATGAGAGTAAGGACAAAGAGAAGTGGTTTTTGGATGCATTTTCAGCAGGAAAAGGTTCTGATGCTGCCGAGTTTAGTTGGCAACTTGGTTTGGATATTGGTCATTGTAAGGTTTTCATGGAGTCAGAAGATGTTGGAAGGACACTTGATTTATCACTTCTTGGTTCTTATGAAGAACTCTACAAGAAACTGGCTAACATGTTTGATTTAGAAAAATCTGAGATGTTGAATCGTGTGTTCTACCGTGATGCAACAGGTGCTGTGAAGCAAACTGGTGAAGAACCCTTCAGTGAATTCATGAAGACAGCAAAAAGATTGACAATTCTGACAGATTCAGGCAGCAAAAATGTCAGAGG 935 0.369 QVTWDEPDLLQNVKRVSPWLVELVSNVPVIHFSPFTPPRKKLRFPQNLDFPLXVQFPSPTFSGNHLGLNGPLFGLSDNAPACIQGARHAQFGGISLSDLNLNNNKLQLGLFPTNIQHLDVRNRISNGNNMMTENDKNKESLSCLLTIGKKSDKSLEKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVDESKDKEKWFLDAFSAGKGSDAAEFSWQLGLDIGHCKVFMESEDVGRTLDLSLLGSYEELYKKLANMFDLEKSEMLNRVFYRDATGAVKQTGEEPFSEFMKTAKRLTILTDSGSKNVRG 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20883g00001 312 Coils Coil 192 195 - -
Trme20883g00001 312 Gene3D - 1 29 - -
Trme20883g00001 312 ProSiteProfiles PB1 domain profile. 226 306 IPR000270 GO:0005515
Trme20883g00001 312 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 306 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme20883g00001 312 Coils Coil 155 158 - -
Trme20883g00001 312 Gene3D - 226 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20883g00001 Trme-Chr20883 14 1341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20883g00001 1 311 B3 DNA Binding Superfamily AT2G28350 43.452 1.69e-64 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20883g00001 - - gmx:100814686 361.688