Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2087g00001 ATGGGTTCGCTCGATGCACCAATCAGCGCGGAAAACGGCACCGTTCCGGCCGCCGGCCACGGTAAATCTCCGTTAACCGATGGAGGCATACGCGCTCCACCGTCAGATTCGGTACCGGAGTACGAATCATCTAAGCGGAGGAGATCGTCTGTGCTTCCCCTGGAAGTTGGGACACGCGTGATGTGCCGTTGGAGAGACGGGAAGTATCATCCTGTCAAAGTCATCGAACGTCGTAGAGTTCATGGCTGTGGACCCAACGATTATGAGTATTACGTTCATTATACTGAGTTCAATAGGAGGCTTGATGAGTGGGTGAAGCTTGACCAGCTCGATCTTGATTCTGTGGAGGCAGTTGTTGATGAGAAAGTGGAGGAGAAGGGGGCATCAGGTTTGAAGATGACACGCCACCAAAAGAGGAAGATCGATGAGACACATGTTGAG 441 0.5215 MGSLDAPISAENGTVPAAGHGKSPLTDGGIRAPPSDSVPEYESSKRRRSSVLPLEVGTRVMCRWRDGKYHPVKVIERRRVHGCGPNDYEYYVHYTEFNRRLDEWVKLDQLDLDSVEAVVDEKVEEKGASGLKMTRHQKRKIDETHVE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2087g00001 147 Pfam RNA binding activity-knot of a chromodomain 54 112 IPR025995 -
Trme2087g00001 147 CDD CBD_MOF_like 57 126 - -
Trme2087g00001 147 SMART chromo_7 68 127 IPR000953 -
Trme2087g00001 147 FunFam Histone acetyltransferase 44 147 - -
Trme2087g00001 147 SUPERFAMILY Chromo domain-like 48 145 IPR016197 -
Trme2087g00001 147 MobiDBLite consensus disorder prediction 1 51 - -
Trme2087g00001 147 Gene3D - 42 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2087g00001 Trme-Chr2087 274 2236 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2087g00001 1 147 C2H2 Transcription Factor Family AT5G09740 60.645 1.42e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2087g00001 K11308 - gmx:100819116 226.868