Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20878g00001 ATGGGTGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCAATTGAATATATCAAATTCCTCCATGAACAAGTGACTGTTTTAAGCACCCCATATATGAAAAGTGGAGCTCCAATACAACATCAACAG 168 0.4107 MGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQHQQ 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20878g00001 56 FunFam Transcription factor bHLH123 family 1 56 - -
Trme20878g00001 56 CDD bHLH_AtbHLH_like 1 42 IPR045239 -
Trme20878g00001 56 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 2 44 - -
Trme20878g00001 56 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 34 IPR011598 GO:0046983
Trme20878g00001 56 Gene3D - 1 55 IPR036638 GO:0046983
Trme20878g00001 56 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 53 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20878g00001 Trme-Chr20878 75 645 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20878g00001 1 56 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 85.714 2.96e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20878g00001 - - qsu:112024716 112.849