Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme208787g00001 GCTGCTGAAGCTTTTCCATACGAAGAACCCTCGAAAGTAGTGAATAGTGATGATGGTCTTGAGATCAAGAAGCTTGGAATTTCTCAGGATATTGTTTCTGCTTTGGAAAAGAAAGGAATCACTAAGCTTTTCCCCATTCAGAGGGCGGTACTTGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGTGCTAGAACAGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATTATGGATAAGATCATTCAGTTTAATGCTAAGCATGG 269 0.4164 AAEAFPYEEPSKVVNSDDGLEIKKLGISQDIVSALEKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHG 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme208787g00001 90 Pfam DEAD/DEAH box helicase 44 84 IPR011545 GO:0003676|GO:0005524
Trme208787g00001 90 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 21 85 - -
Trme208787g00001 90 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 85 IPR027417 -
Trme208787g00001 90 Gene3D - 7 90 IPR027417 -
Trme208787g00001 90 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 20 48 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme208787g00001 Trme-Chr208787 17 426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme208787g00001 13 78 Eukaryotic Initiation Factors Gene Family AT3G19760 32.857 2.06e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme208787g00001 - - tpra:123920937 171.785