Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20876g00001 ATGGAGAGTGATACGAAACCGAATGTGTTAATGGAACGATATGAGTTAGGGAGGTTACTTGGTCAGGGAACGTTTGGAAAGGTTTACTATGCACGGAGTAGGGTAACTAACCAGAGTGTTGCCATTAAAGCGATTGACAAAGATAAGGTTATGAGAAGTGGTCATGCTGATCGAATCAAGCGCGAAATATATGTTATGAAATTGGCTAGACATCCGAATATTATACAGCTTTTTGAGGTTATGGCAACTAAGAGTAAAATTTACTTTGTTATCGAGTTTGCTAAAGGCGGTGAGCTTTTTAACAAGGTGGCTAAAGGAAAACTCAAAGAAGAAGTTGCACACAGATATTTTAAGCAGTTAATTAATGCGGTCGATTTTTGTCACAGTAGAGGCGTGTATCATCGAGACATTAAGCCTGAAAACATTCTATTGGATGAAAATGGGAATCTGAAGGTTTCTGATTTTGGGTTAAGTGCTCTTGTGGAATCAAATCAACAGGATATGATTCTCCGTACGCCTTGTGGCACTCCGGCCTATGTTGCTCCGGAAGTCATCAAAAGGAAAGGGTTATCTTCCTTTTCATGA 585 0.3966 MESDTKPNVLMERYELGRLLGQGTFGKVYYARSRVTNQSVAIKAIDKDKVMRSGHADRIKREIYVMKLARHPNIIQLFEVMATKSKIYFVIEFAKGGELFNKVAKGKLKEEVAHRYFKQLINAVDFCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVESNQQDMILRTPCGTPAYVAPEVIKRKGLSSFS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20876g00001 194 FunFam Maternal embryonic leucine zipper kinase 4 193 - -
Trme20876g00001 194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Trme20876g00001 194 Pfam Protein kinase domain 14 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20876g00001 194 ProSiteProfiles Protein kinase domain profile. 14 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20876g00001 194 SMART serkin_6 14 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme20876g00001 194 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Trme20876g00001 194 Gene3D Transferase(Phosphotransferase) domain 1 4 194 - -
Trme20876g00001 194 FunFam Non-specific serine/threonine protein kinase 5 93 - -
Trme20876g00001 194 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 8 189 - -
Trme20876g00001 194 SUPERFAMILY Protein kinase-like (PK-like) 10 190 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20876g00001 Trme-Chr20876 553 1199 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20876g00001 4 189 CBL-interacting serine-threonine protein kinases AT5G58380 72.043 1.96e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme20876g00001 Pkinase 1.9e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20876g00001 - K07198 gmx:100790905 329.717