Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme20866g00001 | AGATACACTGTCCGTTCTTTTGGTATCAGAAGAAATGAGAAGATTGCATGCTATGTCACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGTTTGAAGGTGAAGGAATATGAATTGCTGAGAAGAAACTTTAGTGATACCGGGTGTTTTGGATTYGGTATTCAGGAGCATATTGATTTGGGAATTAAGTATGATCCTTCAACCGGTATTTATGGGATGGACTTCTTTGTTGTTCTGGAGCGCCCTGGTTACAGGGTGGGACGTCGTCGTAGGTGCAAGGCTCGTGTTGGGATCCAACATCGTGTCACAAAGGAT | 321 | 0.4393 | RYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKD | 107 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme20866g00001 | 107 | FunFam | 60S ribosomal protein L11 | 1 | 107 | - | - | |
| Trme20866g00001 | 107 | SUPERFAMILY | RL5-like | 1 | 106 | IPR022803 | - | |
| Trme20866g00001 | 107 | Gene3D | - | 1 | 107 | IPR022803 | - | |
| Trme20866g00001 | 107 | Coils | Coil | 106 | 107 | - | - | |
| Trme20866g00001 | 107 | PANTHER | 60S RIBOSOMAL PROTEIN L11-RELATED | 1 | 107 | IPR002132 | GO:0003735|GO:0005840|GO:0006412 | |
| Trme20866g00001 | 107 | Pfam | ribosomal L5P family C-terminus | 14 | 91 | IPR031309 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme20866g00001 | Trme-Chr20866 | 1 | 825 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme20866g00001 | 1 | 107 | Cytoplasmic Ribosomal Protein Gene Family | AT2G42740 | 97.196 | 3.15e-75 | 218 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme20866g00001 | K02868 | - | mus:103987828 | 203.756 |