Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme208277g00001 ATATCCTTGCACACTACTCAAACTCAAGGGTACATTCCAATTGCTGCAAAAGGCCATAAGGAGTCTGTTTATGCATTGGCCATGAATGAAGGTGGAACAATTCTTGCCTCTGGTGGCACAGAAAAGGTTGTACGTCTCTGGGACACAAGGTCAGGATCAAAGAAGCTAAAGCTTAAAGGGCACACAGATAACATCAGGGCTCTACTTCTGGATTCTACTGGCAGGTTTATAGAATGA 237 0.4388 ISLHTTQTQGYIPIAAKGHKESVYALAMNEGGTILASGGTEKVVRLWDTRSGSKKLKLKGHTDNIRALLLDSTGRFIE 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme208277g00001 78 SUPERFAMILY WD40 repeat-like 17 74 IPR036322 GO:0005515
Trme208277g00001 78 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 57 IPR001680 GO:0005515
Trme208277g00001 78 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 53 - -
Trme208277g00001 78 Gene3D - 1 77 IPR015943 GO:0005515
Trme208277g00001 78 SMART WD40_4 9 48 IPR001680 GO:0005515
Trme208277g00001 78 PANTHER WD40 REPEAT PROTEIN 15 74 - -
Trme208277g00001 78 Pfam WD domain, G-beta repeat 17 48 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme208277g00001 Trme-Chr208277 2 424 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme208277g00001 25 77 U-box Gene Family AT2G33340 33.962 2.15e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme208277g00001 K15361 - gmx:100788971 139.428