Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme208059g00001 ATGAAGGCTATGAACAAGTGGTTATGTGAACATGGTGATAATCCAGGTACCACAAGAGTGGTAGGAACCTTAGGCTATTTGGCCCCAGAGTTGCTTAGAACAGGAAAAGCATCTACAAGTTCTGATGTTTTTGCATTTGGTGCATTTCTTCTTGAGGTTGCTTGTGGGAGAAGGCCTATTGAGCCTAAGGCATTACAAGAAGACTTAGTGTTAGTGGATTGGGTGTGGGAAAGGTACAAAGAAGGAAGAATACTTGAAGTAGTGGATCCTAAATTGAATGGAAATTTTGATGAAAGTGAG 300 0.41 MKAMNKWLCEHGDNPGTTRVVGTLGYLAPELLRTGKASTSSDVFAFGAFLLEVACGRRPIEPKALQEDLVLVDWVWERYKEGRILEVVDPKLNGNFDESE 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme208059g00001 100 ProSiteProfiles Protein kinase domain profile. 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme208059g00001 100 Gene3D Transferase(Phosphotransferase) domain 1 5 100 - -
Trme208059g00001 100 Pfam Protein kinase domain 17 62 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme208059g00001 100 SUPERFAMILY Protein kinase-like (PK-like) 13 96 IPR011009 -
Trme208059g00001 100 PANTHER - 9 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme208059g00001 Trme-Chr208059 25 407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme208059g00001 8 100 Receptor kinase-like Gene Family AT3G55550 68.817 5.20e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Trme208059g00001 Pkinase 6.6e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme208059g00001 - - psat:127127594 168.703