Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20792g00001 ATGGTAAGTGGTGGTGGCCGTCTTAGACCTCAGGAGGATTCACTTAGTAACCCTGTCGATATGGTAGTTGGTACCCCTGGCAGGATTCTTCAGCATATTGAAGAGGGAAATATGGTATACGGTGACATCCAATACGTGGTATTAGATGAGGCTGACACGATGTTTGATCGGGGCTTTGGTCCTGATATTCGCAAATTCCTGGCCCCATTAAAACACCGTGCTTCTAAACCTGATAGCCTNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANAAGCTGTGCAAAATCTGGTTGATGAGGAGTTTCAAGGTATTGTCCATTTGCGCACATCCACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTCTTAAACTTTCTGGTTCTGAGAACAAGATGGATGCATTACTTCAGTGTAGCTCAAGTTACACCTTCTTTATCTGGGGATTGTTTGATTCTGGGTTTGAACTTTGA 531 0.3597 MVSGGGRLRPQEDSLSNPVDMVVGTPGRILQHIEEGNMVYGDIQYVVLDEADTMFDRGFGPDIRKFLAPLKHRASKPDSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQNLVDEEFQGIVHLRTSTLHKKISSARHDFLKLSGSENKMDALLQCSSSYTFFIWGLFDSGFEL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20792g00001 176 Gene3D - 1 144 IPR027417 -
Trme20792g00001 176 Pfam DEAD/DEAH box helicase 3 75 IPR011545 GO:0003676|GO:0005524
Trme20792g00001 176 MobiDBLite consensus disorder prediction 1 20 - -
Trme20792g00001 176 Coils Coil 80 80 - -
Trme20792g00001 176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Trme20792g00001 176 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 160 - -
Trme20792g00001 176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 74 IPR027417 -
Trme20792g00001 176 Coils Coil 111 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20792g00001 Trme-Chr20792 123 1232 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20792g00001 4 69 Eukaryotic Initiation Factors Gene Family AT3G13920 39.130 3.37e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20792g00001 - - vvo:131623053 234.187