Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20788g00001 GATTGTTCCATATCTGTAAAAGCTGCAGGTGTTATAACAGCACAAGCGAGAACAAATCCAAATGATGCAAATGGATTTGTTTTTAAGAATTGTAATGTGTTTGGAGGTGGTACAACATATTTGGGAAGACCATGGAGAACATATGCTAGAGTTCTTTTCTACAATACAAATATGTCTAACATTGTACTACCTCTTGGTTGGGATCCTTGGAATTTCGTTGGTCACGAGGATCACATAGAATTCTCAGAGTATAACAATTATGGACCTGGTGCTAACACAAGCAATCGAGTGAAATGGATGAAGCAATTGGACTTGCCAACAGTTACTAAAATGGCAAGTACTGGTTTTATTGATGATGAAGGATGGATTAATAATCAACTATTCTAA 387 0.3643 DCSISVKAAGVITAQARTNPNDANGFVFKNCNVFGGGTTYLGRPWRTYARVLFYNTNMSNIVLPLGWDPWNFVGHEDHIEFSEYNNYGPGANTSNRVKWMKQLDLPTVTKMASTGFIDDEGWINNQLF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20788g00001 128 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 124 - -
Trme20788g00001 128 Pfam Pectinesterase 9 117 IPR000070 GO:0030599|GO:0042545
Trme20788g00001 128 Gene3D - 1 128 IPR012334 -
Trme20788g00001 128 SUPERFAMILY Pectin lyase-like 1 125 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20788g00001 Trme-Chr20788 264 726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20788g00001 10 124 Carbohydrate Esterase AT1G05310 37.391 2.66e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20788g00001 - - gmx:100812950 194.512